Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00180 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGGTCATGACCACCATGAACTCCATCTACGTTCTACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGATGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAGGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGCTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTCCAACCAAGGCAAATTGCTATATGGTTTCAGAACAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTATGAAAGCTGATAATGATTCACTCAAAGCTCAGAATCAGAAACTACATGCAGAGCTACAAACCCTGAAAAATAGGGACTGCTGTGAAACCGAAACAATTAACCTCAAGAAAGAAACTGAGGGTTCTTGGAGCAGTGGAAGCAACAACAGTTCAGAAATCAACTTGGATCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCCCAGAATGGAAAAAGCCTTCTACCAACTTCCCTTAAGCCAACAAGCCTAACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAACAACAGAATTTTTGGCCTTGGCCTGAGCAGCAGCAACAGTTTCATTAA 834 0.4604 MAFPPSHTFMFQTHEGHDHHELHLRSTSSSLNAFPSFPPHHFQGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKRRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAMKADNDSLKAQNQKLHAELQTLKNRDCCETETINLKKETEGSWSSGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPTSLKPTSLTQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPEQQQQFH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00180 277 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Spst4g00180 277 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Spst4g00180 277 SUPERFAMILY Homeodomain-like 70 138 IPR009057 -
Spst4g00180 277 SMART HOX_1 79 140 IPR001356 GO:0003677
Spst4g00180 277 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Spst4g00180 277 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Spst4g00180 277 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Spst4g00180 277 Coils Coil 128 176 - -
Spst4g00180 277 Gene3D - 73 143 - -
Spst4g00180 277 CDD homeodomain 81 137 IPR001356 GO:0003677
Spst4g00180 277 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Spst4g00180 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 269 IPR045224 GO:0003700
Spst4g00180 277 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00180 Spst-Chr4 1907276 1909606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00180 1 271 Homeobox Transcription Factor Family AT3G01220 50.719 1.81e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g00180 Homeodomain 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00180 K09338 - gmx:100790803 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00180 4 1907276 1909606 Spst1g01311 1 16079480 16081602 PCT