Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00179 ATGAGGATGAAAATTGCAATTGGTGCTGCTAATGGCCTTGCATTTTTACATGAGGAAGCTTCAAGGCCAATAATATTTCCAGATTTTAAGACCTCTAAGATCTTATTGGATATGGATTGTAACGCAAAACTTTGGGACTTTGGTCTTGCTAAAGAAATTCATTTAACAACTAAAGTACTACGAATAAAAGGCTATGAAGCCCCTGAGTACATGATGACTGGAAACATTACTTCTGAGAGCAATGTTTATAGCTTTGGGGTTGTTCTACTTGAGATGTTGACAGGAAGAAGAGCCTTGGATCAGACAATGCCTATAGAAGAACAAAACTTGATAGAATGGTTGCGACCTCAACTTAGAGACAAAGGAAAGTTTCATTATTTAATGGACCCTAGACTTGAAGGTCAATACCCTACAAAATGTGCTCATAGGACAATGAGGTTAGCTACTCATTGTCTTCGCCTAGACCCTAAAGCAAGACCACTTATGAGTGAAGTAGTTCATGAGTTGAAGAATTTGCATGATAACATGGTTAGTGAACTTGGTCCTTCCAACCGTGTCTGTGCTAATAAGTATGGTCTTGGAATACCTTCATCACCAAATGTTTTAAGGTGTTTTCAAGCCTCACCACAATGTCAATACTATCCTCTACCTCTACCTCCAGATCCACCAAATCCTAGTGTTGGATCTTCATCTAAATCCTAA 702 0.386 MRMKIAIGAANGLAFLHEEASRPIIFPDFKTSKILLDMDCNAKLWDFGLAKEIHLTTKVLRIKGYEAPEYMMTGNITSESNVYSFGVVLLEMLTGRRALDQTMPIEEQNLIEWLRPQLRDKGKFHYLMDPRLEGQYPTKCAHRTMRLATHCLRLDPKARPLMSEVVHELKNLHDNMVSELGPSNRVCANKYGLGIPSSPNVLRCFQASPQCQYYPLPLPPDPPNPSVGSSSKS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00179 233 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00179 233 Pfam Protein kinase domain 6 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00179 233 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1 180 - -
Spst4g00179 233 PANTHER OS01G0588500 PROTEIN-RELATED 1 173 - -
Spst4g00179 233 SUPERFAMILY Protein kinase-like (PK-like) 2 180 IPR011009 -
Spst4g00179 233 Gene3D Transferase(Phosphotransferase) domain 1 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00179 Spst-Chr4 1897981 1899592 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00179 2 169 Glycoside Hydrolase AT3G07070 48.276 1.28e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst4g00179 Pkinase 2.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00179 - - var:108344548 363.614