Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00176 ATGGGGAGTATTGGTACGAGTGATGGTAATTGCAAGGGAGGGAGAAAAAACAAAGATGTTGCTCAAGGTAATTCTGAAAATGGTTCAACATTTTGGGAAAAATTGAGGTTTTTTCTAGGTTGCTTGCTTTTTAGTTCAAAAGGAGAAGGATCCTCCATTGACAAAAGCAAACAAGGTGAAGGAAGAAATGTTGAGAAGAAAAGATCCTCATCCACCAGCGAAAGCCAGGAATTTATTAAAAGTTCTTCCAATCTTAGAAGGTTCACTTTTCACGATATTCAGTTGGCAACAAAGAATTTTGACAGTACGAATTTTCTTGGTAGGGGAGGTTTTGGAACTGTGTTCAAAGGTTGGGTTGATGAAATCGGAAATTATGCAGAAACTGGTACAAGGATTCCAGTAGCAGTGAAGACTCTCAACCCAAATGGGTTTCAAGGTCACAAACAATGGCTTGCTGAAATCAAATATCTGGGTGAACTCCATCATCCTAATCTAGTAAGATTGGTTGGCTATTGCATGGAGGAAGATAAAAGGGTACTTGCATACGAGTTCATGTGTCGAGGAAGCTTAGAGAAGTATCTGTTCCAAAGAGGAACTACGCGACTTCCATGGTCTATTAGGATGAAAATTGCAATGGATGCTGCTAATGGTTTGACATTTTTGCATGAGGAAGCTTCACTAGCAGTAATATTTCGAGATTTCAAGACATCCAATATACTATTAGATAAGGCCTTCAACGCAAAACTTTCAGACTTTGGGTTTGCAAAAGATGCACCAGTGGGAGATAAAACGCATATATCTACTGAGGTGATGGGAACCGAAGGCTATATAGCTCCCGAGTACGTGATGACAGGACACCTTACTTCGAAGAGTGATGTTTACAGCTTTGGGATGGTTCTCCTTGAAATGTTGACAGGAAGAAGAGCTGTTGATCAAAGGAGGCCAACAAAAGAGAAAAATTTGGTAGATTGGTTGCGACCTCGTATTAGGAGAAAAGAAAATTTTCATCAAGTGATGGATCCTAGATTTGAAGGACAATATCCTGTGAAACAAGCCTATAGGGCAATGAGGTTGGCCATTCACTGTCTTCGCCTTGATCCAGAAACAAGACCCCTTATGAGTGATGTGGTTCGCGAGTTGCAGTCTTTGCTCGCTCATGATGATGACATGCCTTCTGGTCCCTCAACCTCATCTCCCTCACCTTCAATCCCCTCACTTCCAAGAATTCATGTTGGCCCCTCAAACCATGCTGGTGTTAACAAGTATGGCCTTAGAACTGGTCCGGCACCAAATAAACTGGGAATGCGATTGCAGTGGTTCACGGAGTTCTCTGCACATTGCATTCAACGAGCTGTTTTCACAAAGAAATGTGTTTGGTTCAGCAATGGAAGAAATTGTAGAAATGATATTGATAGAAATGATGTAATTGCCCAAAGATCATCATCCACTGGAAAGTTAAGTAACTATGCAAGATCAAGTCCTCTTGATCAAAAATTAATTGTAGCTTCTTTGCTTCTTCGAAGGTTCACCTTTCACGATCTTATGTTGGCAACGAGATCTTTTAAGGTTGAGAATTTTTTTGATGAGGAAGGGTTTGGAATTTTATTGAAAGGTTGGATTAATCCATATGGCAACTATGCAGCAAGACCTGGAACAGGGATTCCCATTGCAGTAAAAGCACTTAACTTCAATAGACTTCAACATCACAATGAATGGCTTGATGAGATTATTTATCTTAGTGAACTTCATCATTTAAATCTGGTCAAATTAGTAGGGTTTTGCCTTGAGGATGAGAAAATGCTACTTGTATACGAGCATATGAGTGAAGGAAGTTTAGAAAAGCATCTTTTCAAGACAGGAACTAGGTTTCTTACATGGCCTACAAGAATGAAAATTGCAATTAGTGCTGCTAATGGCATGGCATTTTTGCATGAGGAAGCTTCAAGACCATTAATATTTCGAGATTTTAATACATCTAGTATCCTATTGGAAAAGGATTACAACACAAAACTTTGGGACTTTGGTTTTGCAAAAGATGCTCCAGTGACAAGTAAGGTGGTAGGATCAAAAGGGTATGAAGCCCCTGAGTATGTGATGACAGGACAGCTTACTTCGAAGAGCAACGTTTATAGCTTTGGACTGGTTTTACTTGAACTCTTGACAGGAAGAAGAGTGATAGATGAAACAATGCCTCTAGAGGAGCAAAACTTGATGAAATGGTTGGGGCCTCGTGTTAGAAACAAAGCAAATTTTCACTATTTGATGGATCCTAGACTTGAAGGTCAATACCCAACAAAATTTGCTCATAGGACAATGAGGTTAGCTGTTCAATGTCTTCGTCTTGACCCCAAAACAAGACCTCTTATGAGTGAAGTAGTTCGTGAGTTGAAGTCTTTGCATGATCAAGATGCTTCAGTATCAGTTCCTTCAACCTCACTTGGGAGAATGCATATAGGTTCATCCAACCATGGTAGTGCTACCAAGTATGGCCTTGGAATAGGTTCTTCTTCAAATGTTCCAAGGTGCTTTCAAGACTATCCTCTACCTCTACCTCCACCTTTACCTCCACCTCCACTTCGACCTTCATCCAAATCCTAG 2598 0.4026 MGSIGTSDGNCKGGRKNKDVAQGNSENGSTFWEKLRFFLGCLLFSSKGEGSSIDKSKQGEGRNVEKKRSSSTSESQEFIKSSSNLRRFTFHDIQLATKNFDSTNFLGRGGFGTVFKGWVDEIGNYAETGTRIPVAVKTLNPNGFQGHKQWLAEIKYLGELHHPNLVRLVGYCMEEDKRVLAYEFMCRGSLEKYLFQRGTTRLPWSIRMKIAMDAANGLTFLHEEASLAVIFRDFKTSNILLDKAFNAKLSDFGFAKDAPVGDKTHISTEVMGTEGYIAPEYVMTGHLTSKSDVYSFGMVLLEMLTGRRAVDQRRPTKEKNLVDWLRPRIRRKENFHQVMDPRFEGQYPVKQAYRAMRLAIHCLRLDPETRPLMSDVVRELQSLLAHDDDMPSGPSTSSPSPSIPSLPRIHVGPSNHAGVNKYGLRTGPAPNKLGMRLQWFTEFSAHCIQRAVFTKKCVWFSNGRNCRNDIDRNDVIAQRSSSTGKLSNYARSSPLDQKLIVASLLLRRFTFHDLMLATRSFKVENFFDEEGFGILLKGWINPYGNYAARPGTGIPIAVKALNFNRLQHHNEWLDEIIYLSELHHLNLVKLVGFCLEDEKMLLVYEHMSEGSLEKHLFKTGTRFLTWPTRMKIAISAANGMAFLHEEASRPLIFRDFNTSSILLEKDYNTKLWDFGFAKDAPVTSKVVGSKGYEAPEYVMTGQLTSKSNVYSFGLVLLELLTGRRVIDETMPLEEQNLMKWLGPRVRNKANFHYLMDPRLEGQYPTKFAHRTMRLAVQCLRLDPKTRPLMSEVVRELKSLHDQDASVSVPSTSLGRMHIGSSNHGSATKYGLGIGSSSNVPRCFQDYPLPLPPPLPPPPLRPSSKS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00176 865 FunFam Serine/threonine-protein kinase BIK1 67 184 - -
Spst4g00176 865 MobiDBLite consensus disorder prediction 801 821 - -
Spst4g00176 865 FunFam Serine/threonine-protein kinase PBS1 185 398 - -
Spst4g00176 865 FunFam Receptor-like serine/threonine-protein kinase ALE2 607 812 - -
Spst4g00176 865 Gene3D Phosphorylase Kinase; domain 1 69 184 - -
Spst4g00176 865 SUPERFAMILY Protein kinase-like (PK-like) 491 795 IPR011009 -
Spst4g00176 865 MobiDBLite consensus disorder prediction 1 26 - -
Spst4g00176 865 MobiDBLite consensus disorder prediction 845 865 - -
Spst4g00176 865 MobiDBLite consensus disorder prediction 386 410 - -
Spst4g00176 865 ProSitePatterns Protein kinases ATP-binding region signature. 106 137 IPR017441 GO:0005524
Spst4g00176 865 MobiDBLite consensus disorder prediction 844 865 - -
Spst4g00176 865 MobiDBLite consensus disorder prediction 803 821 - -
Spst4g00176 865 CDD STKc_IRAK 106 383 - -
Spst4g00176 865 ProSiteProfiles Protein kinase domain profile. 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00176 865 Gene3D Phosphorylase Kinase; domain 1 497 606 - -
Spst4g00176 865 SUPERFAMILY Protein kinase-like (PK-like) 83 401 IPR011009 -
Spst4g00176 865 MobiDBLite consensus disorder prediction 53 73 - -
Spst4g00176 865 Gene3D Transferase(Phosphotransferase) domain 1 185 392 - -
Spst4g00176 865 Gene3D Transferase(Phosphotransferase) domain 1 607 812 - -
Spst4g00176 865 Pfam Protein tyrosine and serine/threonine kinase 104 380 IPR001245 GO:0004672|GO:0006468
Spst4g00176 865 Pfam Protein tyrosine and serine/threonine kinase 533 796 IPR001245 GO:0004672|GO:0006468
Spst4g00176 865 ProSiteProfiles Protein kinase domain profile. 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00176 865 MobiDBLite consensus disorder prediction 49 78 - -
Spst4g00176 865 PANTHER OS01G0588500 PROTEIN-RELATED 67 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00176 Spst-Chr4 1848575 1857566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00176 457 809 Glycoside Hydrolase AT3G07070 41.509 8.36e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst4g00176 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00176 - - vum:124826044 650.203