Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00173 ATGGCTGACAAGGAAGAAGCCATGCATGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAACGTGCCACTTGAAGAGGTTTTTCAGACTTTGAGGTGTGATTCAAATGGACTCACAACAAAATCTGCTGAGGACAGGTTGGCCATTTTTGGCCACAACAAGCTTGAGGAGAAACAGATGGGAAACAAACCCCTTTCTCCATTATTTGATGGGAAAACTGAGAGCAAGGTTTTGAAGTTTTTGGGGTTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCTTTGGCCAATGGAGGAGGAAAACCTCCTGATTGGCAAGACTTCGTTGGGATTATCACACTCCTTATTATCAATTCAACAATAAGTTTCATTGAGGAGAACAATGCTGGTAATGCCGCAGCAGCTCTGATGGCTCGTCTAGCACCTAAAGCTAAGGTCCTTCGAGATGGGAAATGGATTGAGGAGGATGCTAGTATTCTTGTTCCAGGTGATATAATTAGTGTTAAGCTCGGGGATATTATCCCTGCGGATTCTCGTCTACTTGAAGGTGATCCATTGAAGATTGATCAGTCTGCACTTACAGGCGAGTCTCTACCTGTCACAAAAGGCCCTGGTGATAGTGTTTATTCAGGCTCTACATGCAAGCAGGGAGAGATCAATGCAGTCGTTATTGCCACGGGAGTTCATACCTTCTTTGGCAAGGCCGCTCACCTTGTGGACTCGACAAATCAAGTTGGTCATTTTCAGAAGGTCCTGACTGCTATTGGGAACTTCTGCATATGTTCCATTGCTGTGGGAATGATAGTAGAGATAATTGTCATGTACCCAATTCAACACCGACAATATCGTCCTGGGATTGACAATCTGCTTGTGCTTCTTATTGGAGGAATTCCTATAGCCATGCCTACTGTTTTGTCAGTGACAATGGCTATTGGATCCCATCGCTTAGCTCAACAGGGTGCTATTACTAAAAGAATGACAGCAATAGAAGAGATGGCAGGAATGGATGTACTATGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTGTCAGTTGACAAGAATCTTATTGAGATTTTTGCTAAAGGAGTTGACGTAGATACCATAGTTCTAATGGCTGCTCGGGCTGCACGATTGGAAAACCAAGATGCTATAGATGCGGCTGTCGTAGGGATGTTAGGTGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGATTCATTTCCTTCCCTTCAATCCAACTGACAAGCGAACTGCGATGACTTATATAGATAGTGAAGGTAAAATGCATCGTGTCAGCAAAGGCGCACCAGAGCAGATTTTGAATCTTGCACACAATAAGTCAGAGATTGAACGCAGAGTTCATTCTGTCATTGATAAGTTTGCAGAGCGGGGCTTAAGGTCTCTTGCAGTGGCTTACCAGGAAGTTCCTGATGGGAAAAAAGAAAGCCAAGGAGGGCCTTGGCAATTTATTGGTCTCTTGCCTTTGTTTGACCCACCTAGACATGATAGTGCTGAGACAATACGTAGGGCATTAAACCTTGGAGTAAATGTTAAGATGATAACAGGCGATCAACTAGCTATAGGAAAAGAAACAGGACGTCGTCTGGGAATGGGAACCAACATGTACCCTTCGTCGGCTTTATTGGGCCAAAACAAGGATGAAGCAATTGCTACCTTGCCAGTGGATGAGTTGATTGAAAAAGCAGATGGATTTGCTGGTGTTTTCCCTGAACACAAATATGAGATTGTGAAACGTTTACAAGCTAGGAAACACATATGTGGAATGACTGGTGATGGGGTTAATGATGCTCCTGCTCTTAAAAGGGCAGATATTGGAATAGCTGTTGCTGATGCTACTGATGCAGCTCGTAGTGCTTCTGACATTGTTCTAACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTATTGACTAGTCGAGCCATATTCCAAAGGATGAAGAACTACACAATCTATGCAGTTTCCATAACAATTCGTATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGCAATTTGATTTTCCACCATTTATGGTACTGATTATTGCTATTCTTAATGATGGTACCATTATGACAATATCAAAGGATAGGGTAAAACCATCTCCATATCCTGATAGCTGGAAGTTGGCAGAGATCTTTATCACTGGAATAATTCTTGGTGGTTATTTAGCTATGATGACAGTCATTTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTCAAACATTTGGAGTCACAAGCCTTCAGAAAAAGGATAGGGATGACTATAGAAAGCTTGCATCAGCAATATACCTACAAGTAAGCACAATTAGTCAGGCCCTCATATTCGTTACACGAGCACGAAGTTGGTCTTATGTTGAGCGTCCGGGTTTGTTACTAGTAGCAGCTTTTGTTATCGCCCAACTAATAGCTACCCTAATAGCAGTTTATGCAAATTGGAGTTTTGCTGCTATTGAAGGAATTGGATGGGGTTGGGCTGGTATTGTTTGGCTTTATAACCTCATCTTTTACATGCCACTTGACTTTATCAAGTTCATAATTCGGTATGCCTTGAGTGGAAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTTACAAGGAAAAAGAATTTCGGAAGAGAAGAACGTGAGCTTAAATGGGCACATGCACAGAGAACACTCCATGGCCTTCATCCACCAGAGACTAAGATGTTCGGTGAACGAACAACTTACACGGAACTTAATCAGATGGCTGAAGAGGCTAAAAGACGAGCAGAGATTGCAAGACTGAGAGAACTGCATACATTGAAGGGCCATGTTGAGTCTGTGGTTAGGCTGAAGGGCCTTGACATTGATACAATACAGCAATCATACACTGTCTAG 2913 0.4257 MADKEEAMHAVLKEAVDLENVPLEEVFQTLRCDSNGLTTKSAEDRLAIFGHNKLEEKQMGNKPLSPLFDGKTESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWIEEDASILVPGDIISVKLGDIIPADSRLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEINAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRQYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDVDTIVLMAARAARLENQDAIDAAVVGMLGDPKEARAGIQEIHFLPFNPTDKRTAMTYIDSEGKMHRVSKGAPEQILNLAHNKSEIERRVHSVIDKFAERGLRSLAVAYQEVPDGKKESQGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDEAIATLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFITGIILGGYLAMMTVIFFWAAYKTDFFPQTFGVTSLQKKDRDDYRKLASAIYLQVSTISQALIFVTRARSWSYVERPGLLLVAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGIVWLYNLIFYMPLDFIKFIIRYALSGRAWDLVIEQRIAFTRKKNFGREERELKWAHAQRTLHGLHPPETKMFGERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQSYTV 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00173 970 SFLD p-type atpase 327 655 IPR044492 -
Spst4g00173 970 PRINTS P-type cation-transporting ATPase superfamily signature 604 623 - -
Spst4g00173 970 PRINTS P-type cation-transporting ATPase superfamily signature 195 209 - -
Spst4g00173 970 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Spst4g00173 970 PRINTS P-type cation-transporting ATPase superfamily signature 627 639 - -
Spst4g00173 970 PRINTS P-type cation-transporting ATPase superfamily signature 499 510 - -
Spst4g00173 970 PRINTS P-type cation-transporting ATPase superfamily signature 521 531 - -
Spst4g00173 970 NCBIfam HAD-IC family P-type ATPase 579 693 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00173 970 NCBIfam HAD-IC family P-type ATPase 117 365 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00173 970 Pfam E1-E2 ATPase 146 325 - -
Spst4g00173 970 CDD P-type_ATPase_H 36 861 IPR006534 GO:0008553|GO:0016020|GO:0120029
Spst4g00173 970 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 867 IPR023298 -
Spst4g00173 970 Gene3D - 110 835 - -
Spst4g00173 970 SMART Cation_ATPase_N_a_2 17 103 IPR004014 -
Spst4g00173 970 Coils Coil 921 941 - -
Spst4g00173 970 PRINTS H+-transporting ATPase (proton pump) signature 635 660 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00173 970 PRINTS H+-transporting ATPase (proton pump) signature 780 801 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00173 970 PRINTS H+-transporting ATPase (proton pump) signature 576 592 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00173 970 PRINTS H+-transporting ATPase (proton pump) signature 604 620 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00173 970 PRINTS H+-transporting ATPase (proton pump) signature 461 479 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g00173 970 FunFam Plasma membrane ATPase 148 232 - -
Spst4g00173 970 SUPERFAMILY Calcium ATPase, transduction domain A 148 245 IPR008250 -
Spst4g00173 970 FunFam Plasma membrane ATPase 357 504 - -
Spst4g00173 970 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Spst4g00173 970 SUPERFAMILY HAD-like 341 651 IPR036412 -
Spst4g00173 970 FunFam ATPase 4 plasma membrane-type 589 835 - -
Spst4g00173 970 Gene3D - 148 232 - -
Spst4g00173 970 Pfam haloacid dehalogenase-like hydrolase 341 618 - -
Spst4g00173 970 PANTHER CALCIUM-TRANSPORTING ATPASE 19 903 - -
Spst4g00173 970 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 826 IPR006534 GO:0008553|GO:0016020|GO:0120029
Spst4g00173 970 Gene3D - 342 641 IPR023214 -
Spst4g00173 970 SFLD C1.7: P-type atpase like 327 655 - -
Spst4g00173 970 Gene3D - 919 970 - -
Spst4g00173 970 Pfam Cation transporter/ATPase, N-terminus 20 57 IPR004014 -
Spst4g00173 970 FunFam Plasma membrane ATPase 498 652 - -
Spst4g00173 970 Gene3D - 357 504 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00173 Spst-Chr4 1818394 1825354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00173 1 970 Primary Pumps ATPases AT5G62670 86.804 0.0 1726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00173 K01535 - gmx:100805218 1754.18