Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00169 ATGGTTGGAAGTGTAACCAAAGTTGCCTTCATCGTCTTGGTAACTCTGGCTATTAACATTCCATGTCTTGAGGCTGGCATTGGTGACTTTGATAACTTTCTTAAAGCTCAGTCTGAAGAAGCTCATAAAATTGCTCTTGAATCTTATGTTCCAACACCCGAATTGGTCACCAATGAACTCAATTATCATGTTCATTTGTCATTGAAAAACATCTCAAGGAGGCAATTAGGTCAAAAGAGTAACGCAGGAGTTTGTGAGAGCACCAACCCCATTGATAATTGTTGGAGGTGTAACAAAGACTGGGCCAATGATAGGTACCAATTGGCAAAATGTGGAAAAGGTTTTGGAAGACGCGCTATCGGAGGACTTGGTGGACCCATTTATGTTGTCACTGATAATTCCGATGAGAACATGACAGACCCTAAGGAAGGAACTCTCCGCTATGCAGTGACTCAACAAGGTCCCTTGTGGATCACCTTTGCACATAGCATGATTATCACTCTACAACAAGAGCTGTTGATTTCCTCCGACAAGACCATTGATGGTCGTGGTGCCAACGTGCAAATCCGGGATGGTGCTGGCTTAACTATTCAATACGTCAACAATGTTATTATCCATGGGATTCGCATCAAGAACATCGTGCCGAAGGAGGGCGGCATGATTAGGGACGCCTACAACCATGTTGGATTCAGAACTAGGAGTGATGGTGATGCCATCTCTGTTTTCGGAGCCTCCAATATTTGGATTGATCATATTTCCCTCTCTTACAGTGCTGATGGTCTTATTGATGTCATCCAAGGCTCCACTGCCATCACTATCTCAAATTGCCACATGACCAGACATAACGATGTGATGTTGTTTGGAGCTAGTGACACCTACAATGGAGACAAGATCATGCAGATAACACTGGTATTCAATCACTTTGGGCAAGGACTAATCCAGAGGATGCCAAGGTGTCGTTGGGGATTCTTTCACGTTTTGAACAATGACTACACTCACTGGATGATGTATGCAATAGGTGGAAGCGCAGGGCCAACAATTTTAAGTCAGGGAAACCGTTTCATTGCCCCAAACAATGATGTTGCAAAGGAGATCACACACAGGATCAATGCTGGAGAAGAAGTGTGGAAGAATTGGCAGTGGCAATCAGATATGGACCTTTTGATGAATAATGCAACGTTCCAGACTTCAGGGGCACCAATCCAGATTACACATAAAAAGGGTCTCATAATGAAGCCAAGAGATGGCGCTCATGCTAGCAGGCTAACTCGGCATTCTGGTGCCCTGAATTGCTTTGTTGGCCAACCTTGCTAG 1314 0.4429 MVGSVTKVAFIVLVTLAINIPCLEAGIGDFDNFLKAQSEEAHKIALESYVPTPELVTNELNYHVHLSLKNISRRQLGQKSNAGVCESTNPIDNCWRCNKDWANDRYQLAKCGKGFGRRAIGGLGGPIYVVTDNSDENMTDPKEGTLRYAVTQQGPLWITFAHSMIITLQQELLISSDKTIDGRGANVQIRDGAGLTIQYVNNVIIHGIRIKNIVPKEGGMIRDAYNHVGFRTRSDGDAISVFGASNIWIDHISLSYSADGLIDVIQGSTAITISNCHMTRHNDVMLFGASDTYNGDKIMQITLVFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAPNNDVAKEITHRINAGEEVWKNWQWQSDMDLLMNNATFQTSGAPIQITHKKGLIMKPRDGAHASRLTRHSGALNCFVGQPC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00169 437 Gene3D - 88 430 IPR012334 -
Spst4g00169 437 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
Spst4g00169 437 PANTHER PECTATE LYASE 18-RELATED 41 435 IPR045032 GO:0030570
Spst4g00169 437 SMART amb_all 163 360 IPR002022 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Spst4g00169 437 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Spst4g00169 437 Pfam Pectate lyase 171 354 IPR002022 -
Spst4g00169 437 SUPERFAMILY Pectin lyase-like 89 404 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00169 Spst-Chr4 1767008 1769327 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00169 16 437 Polysaccharide Lyase AT1G14420 54.091 1.44e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00169 K01728 - gmx:100810615 723.391