Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00163 ATGACAGGAATAGTGGTTAGAAGAGCAGCAAAGGTTGCCTTCACCCTGTTGGTCACTTTGGCCATTACCATCCCATGCCTTGAAGCTGGTATTGGTGAGCTTGATGAGTTTTTGAAAACTCAAGCTGAGGAAGCCCACAAAATTGCTCTGGAGTCATATGTCCCAACACCCCAATTTGTCACCAATGAACTTAATTACCATGTTCACTTGTCAATGGAAAACAGCACAAGGAGAGAACTAATGCAAGGTAAAGTCAATAGAAAGAAGTGTGAGAGTACAAACCCTATTGACAATTGTTGGAGGTGCCGCAGACACTGGGCCAGTGACCGATACCAATTAGCAAAATGTGGAAAAGGATTCGGAAGAAGCACAGTTGGAGGACTCGGTGGGCCCATTTATGTCGTCACCGATAATTCTGATGATGACATGGTGGACCCTAGGCCAGGAACACTCCGATTCGCAGTGACCCAACAGGGTCCCTTATGGATCATCTTCGCACATAGCATGATCATCAATTTGAAGCAAGAGTTGTTAATTTCCTCAGACAAGACCATCGATGGTCGTGGAGCCAATGTGCAAATTAGGGACGGCGCTGGCCTCACTATTCAATACGTGAACAATGTCATTATTCACGGGATTCGCATCAAGAACATTGTGCCTAAAGAAGGTGGCTTGATCAAGGATTCCTACAACCACATTTCACTGCGAACCAGAAGTGATGGTGATGCCATCTCCATTTTCGGAGCCTCCAACATTTGGATAGATCATATTTCCCTCTCTAATAGTGCTGATGGTCTTGTCGACGTCATCCAAGGCTCCACTGCCATCACTATCTCAAATTGCCACATGACCAAACATAACAATGTGATGTTGTTTGGGGCTAGTGACACCTTCAATGGAGACAAGATCATGCAGGTGACAGTGGCATTCAACCACTTCGGGCAAGGACTAGTCCAGAGGATGCCAAGGTGCAGATGGGGATTCTTTCATGTTTTAAACAACGACTACACTCATTGGAACATGTATGCAATAGGTGGAAGTGCAGGACCAACAATTTTGAGCCAAGGAAATCGTTTCATTGCCCCCCACAACGATGCTGCAAAGGAGATCACACACAGGATCAATGCAGAACCAGAAGTGTGGAAGAATTGGCAATGGCAGTCAGATAAGGACCTTTTAATGAACGGTGCAACCTTCAACACTTCAGGGGCACCAATCCAGATAAAAAACAAAAAAGGTCTCATAATGAAGCCAAGAGATGGCAGACATGCCAGTAGGCTGACACGATATTCTGGCGCCCTAAACTGCCGCATTGGCAAGCCTTGCTAG 1329 0.4582 MTGIVVRRAAKVAFTLLVTLAITIPCLEAGIGELDEFLKTQAEEAHKIALESYVPTPQFVTNELNYHVHLSMENSTRRELMQGKVNRKKCESTNPIDNCWRCRRHWASDRYQLAKCGKGFGRSTVGGLGGPIYVVTDNSDDDMVDPRPGTLRFAVTQQGPLWIIFAHSMIINLKQELLISSDKTIDGRGANVQIRDGAGLTIQYVNNVIIHGIRIKNIVPKEGGLIKDSYNHISLRTRSDGDAISIFGASNIWIDHISLSNSADGLVDVIQGSTAITISNCHMTKHNNVMLFGASDTFNGDKIMQVTVAFNHFGQGLVQRMPRCRWGFFHVLNNDYTHWNMYAIGGSAGPTILSQGNRFIAPHNDAAKEITHRINAEPEVWKNWQWQSDKDLLMNGATFNTSGAPIQIKNKKGLIMKPRDGRHASRLTRYSGALNCRIGKPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00163 442 Pfam Pectate lyase 175 359 IPR002022 -
Spst4g00163 442 SUPERFAMILY Pectin lyase-like 94 411 IPR011050 -
Spst4g00163 442 Pfam Pectate lyase, N terminus 31 80 IPR007524 GO:0030570
Spst4g00163 442 PANTHER PECTATE LYASE 18-RELATED 45 440 IPR045032 GO:0030570
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Spst4g00163 442 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Spst4g00163 442 Gene3D - 93 435 IPR012334 -
Spst4g00163 442 SMART amb_all 168 365 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00163 Spst-Chr4 1675838 1678691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00163 20 442 Polysaccharide Lyase AT1G14420 55.682 2.35e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00163 K01728 - gmx:100785801 732.25