Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00153 ATGGCACGTGAAAATATGAGTGGGGAGAGAGTGGTTGTTACCTTGGGACGCGTGTACGATAGAAAACGTAAGAGAGCACCACACAAGATCAAGATCAAAATCAGAGAGATGATGGGGGAGCTATGGGCTCAAATGGGATCACTAATGGCAACTATGGTGTTCATGTACACCATGTTTGAGCGATTCTTCCCTCCTCACTTTCGTGATCGTCTTCAAGCCTATACTCAAAAAATGACCAACCACTTTAACCCTTACATCCAGATAACCTTTCCTGAGTTCTCAGGGGAAAGACTCAAGAAGAGTGAAGCATACACTGCCATCCAAACCTACCTCAGTGCAAACTCATCTCAAAGAGCCAAAAGACTCAAAGCTGAAGTGGTGAAGGATAGCCAACACCCGCTAGTCCTCAGCATGGATGACAATGAAGAGATCACTGATGAGTTCCAAGGTGTCAAAGTGTGGTGGAGTGCTAGTAAAATAAGCACCAATCCACAGAGATACAACCCTTTCTCTTACTATGGTTCCTCTGATGAGAAAAGGTACTACAAACTTACTTTCCATAAAAGCTACCGTGACATCATCACCATGTCTTACATAAAGCATGTGTTGGAGGAGGGGAAGGAAATTGAGATGAGAAACAGGCAGCTGAAGCTTTACACCAACAATCCTAGCAGTGGTTGGTATGGTTACAAGCGGTCAAAGTGGAGCCACATAGTGTTTGAGCACCCTGCCACTTTTGAAACACTAGCCATGGATCAGAAAAGGAAGGAAGATATCCTAAAAGACCTTGTTAAGTTTAAGAAGGGAAAGGATTATTATGCAAAGATAGGCAAGGCTTGGAAAAGAGGTTATCTTTTGTATGGTCCTCCAGGGACTGGGAAGTCTACCATGATAGCTGCTATTGCTAATTTCATGAACTATGATGTGTATGATCTTGAGTTGACAGCAGTCAAGGACAACACTGAGTTGAGAAAGTTGTTGATTGAAACTCCAAGTAAGTCTATTACAGTGATTGAGGACATTGATTGTTCACTTGATCTTACTGGACAGAGGAAGAAGAAGGAAGAGGATGAGAATGAAGAACCAAAAGATCCTATGAAGAGGAATGAAGAGGAGAGTAGCAAGAGCAGCAAGGTAACTCTATCTGGGTTGTTGAATTTTATAGATGGGATTTGGTCAGCTTGTGGAGGTGAGAGGATCATCATTTTCACCACAAATTATGTGGAGAAACTTGACCCTGCTCTCATTAGGAGAGGGAGGATGGATAAGCACATTGAGATGTCCTATTGTTGCTATGATGCATTCAAGGTGCTAGCCAAGAACTACTTGGATATTGAGTCTCACCTATTGTTTAGTAGAATTGGGAGATTGTTGGAAGAGACAGAAATGTCACCTGCTGATGTTGCTGAGAATCTAATGCCAAAGTCTGTGGATGAAGATGTGGAGACATGCTTGGAGAAATTGATTAAGGCTCTTGAGGTTGACAAGGAGGAAAAAGCAAGGAAAAAGGCTGAAGAAGAAGCAGAAAAGAAGTTGGAGGAGAAACAGAAGGAAGAATCTACTCAGATGGAGGAAATAAACAAAGAAAAAACCAAGGAGAATGTGAAGGAAAATGGTTTTCATTGA 1626 0.4207 MARENMSGERVVVTLGRVYDRKRKRAPHKIKIKIREMMGELWAQMGSLMATMVFMYTMFERFFPPHFRDRLQAYTQKMTNHFNPYIQITFPEFSGERLKKSEAYTAIQTYLSANSSQRAKRLKAEVVKDSQHPLVLSMDDNEEITDEFQGVKVWWSASKISTNPQRYNPFSYYGSSDEKRYYKLTFHKSYRDIITMSYIKHVLEEGKEIEMRNRQLKLYTNNPSSGWYGYKRSKWSHIVFEHPATFETLAMDQKRKEDILKDLVKFKKGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAIANFMNYDVYDLELTAVKDNTELRKLLIETPSKSITVIEDIDCSLDLTGQRKKKEEDENEEPKDPMKRNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNYVEKLDPALIRRGRMDKHIEMSYCCYDAFKVLAKNYLDIESHLLFSRIGRLLEETEMSPADVAENLMPKSVDEDVETCLEKLIKALEVDKEEKARKKAEEEAEKKLEEKQKEESTQMEEINKEKTKENVKENGFH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00153 541 MobiDBLite consensus disorder prediction 497 541 - -
Spst4g00153 541 CDD RecA-like_BCS1 259 427 - -
Spst4g00153 541 FunFam AAA-ATPase ASD, mitochondrial 236 425 - -
Spst4g00153 541 SMART AAA_5 280 431 IPR003593 GO:0016887
Spst4g00153 541 PANTHER BCS1 AAA-TYPE ATPASE 44 502 - -
Spst4g00153 541 Pfam ATPase family associated with various cellular activities (AAA) 285 428 IPR003959 GO:0005524|GO:0016887
Spst4g00153 541 Coils Coil 485 532 - -
Spst4g00153 541 ProSitePatterns AAA-protein family signature. 399 418 IPR003960 GO:0005524|GO:0016887
Spst4g00153 541 MobiDBLite consensus disorder prediction 349 375 - -
Spst4g00153 541 Gene3D - 234 425 IPR027417 -
Spst4g00153 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 488 IPR027417 -
Spst4g00153 541 Gene3D - 426 494 - -
Spst4g00153 541 Pfam Domain associated at C-terminal with AAA 63 157 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00153 Spst-Chr4 1479577 1481634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00153 214 528 Miscellaneous Gene Families AT3G02450 26.220 2.51e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00153 - - gmx:100787917 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01283 1 15527602 15529107 Spst4g00153 4 1479577 1481634 PCT