Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00152 ATGGCCACAGCCATGTTCATATATGCCATGTTCATGCGCTTGGTTCCCCCAACTCTTCAAGCTCGTGTTAGAAGGTACACCAACAAATTCACCTCCTTGGTTTACCCTTACATCAGAATCACCTTCCATGAATTCACAGGTGAACGCCTCATGAAAAGTGAGGCCTACACAGCCATCCAAACCTACCTCAGTGAACACTCTTCCCAGAGTGCCACAAGGCTCAAAGCAGAAGTGATCAAAGTCAAAGACACACACACCCCTTTAGTCCTTAGCATGGATGATAACGAAGAGATCATAGAAGAGTTCCAAGGAGTGAAGTTGTGGTGGGGTTCTTACAAAATCACCCCCAAAACTCAGTCCTTTTCTGTGTACCCTTCTTCAGATGAAAAAAGGTACTACAAACTCACCTTTCACAAACGCTATAGAAGCCTCATCACCGAGTGTTACCTCAAACATGTTTTGGAAGAAGCAAAGGCCATTGAGATGAAGAATAGACAACTGAAGCTTTACACCAACAGTAAGACAAGGTGGAGCCATGTGGTTTTTGAGCATCCAGCAACTTTTGAGACACTTGCAATGAGGCCTAAGGAGAAGGAGGGTATCATCAATGACCTTGTGAAGTTCAAAAGTGGGAAGAGTTATTATACCAAGATTGGTAAGGCTTGGAAAAGAGGGTACTTATTATATGGTCCTCCAGGTACTGGGAAATCTACCATGATAGCTGCAATGGCTAATTTCATGAACTATGATGTGTATGATCTTGAGTTGACAGCAGTGGTGGACAATTCTGATTTGAGAAAGCTGTTAATTAACACGTCAAGCAAGTCGATTATAGTGATTGAAGACATTGATTGCTCTCTTGATCTCACCGGTCAAAGGAAGAAGAAAAAGGAAAGAGTTGAGGGTAAAGAAGGAAAAAGTGCTTCTCTCAAAAGGGGTGATGAAGATGATGAGGACAAGGGAAGTAAGGTAACACTTTCTGGACTATTGAATGTTATAGATGGGATTTGGTCAGCTTGTGGGGGGGAGAGGATCATGGTTTTCACAACTAATTTTGTGGAGAAACTTGACCCTGCTTTGATAAGGAGAGGGAGGATGGATAAGCACATAAAACTGTCATATTGTTGCTATGAGGCATTCAAGGTGCTTGCTAAGAACTACTTGGATGTTGAGTCTCACCATTTGTTTCCTAGAATTGAGAAGTTGTTGGAAGAGACCAAAATCACTCCTGCTGATGTTGCTGAGACTCTGATGCCAAAATCAGAGGATGAAGAAGTGGATACTTCCTTGCATAGCTTGATTCAATTTCTTGAGATGACAGAAATCAAGAAATCCAATTTGCAACAGAGTAAAGATATTAAACATGGTGAAGTAGTGATGGAAGAAAATGGTGTCATCAATTAG 1404 0.4167 MATAMFIYAMFMRLVPPTLQARVRRYTNKFTSLVYPYIRITFHEFTGERLMKSEAYTAIQTYLSEHSSQSATRLKAEVIKVKDTHTPLVLSMDDNEEIIEEFQGVKLWWGSYKITPKTQSFSVYPSSDEKRYYKLTFHKRYRSLITECYLKHVLEEAKAIEMKNRQLKLYTNSKTRWSHVVFEHPATFETLAMRPKEKEGIINDLVKFKSGKSYYTKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVVDNSDLRKLLINTSSKSIIVIEDIDCSLDLTGQRKKKKERVEGKEGKSASLKRGDEDDEDKGSKVTLSGLLNVIDGIWSACGGERIMVFTTNFVEKLDPALIRRGRMDKHIKLSYCCYEAFKVLAKNYLDVESHHLFPRIEKLLEETKITPADVAETLMPKSEDEEVDTSLHSLIQFLEMTEIKKSNLQQSKDIKHGEVVMEENGVIN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00152 467 CDD RecA-like_BCS1 201 372 - -
Spst4g00152 467 PANTHER BCS1 AAA-TYPE ATPASE 2 444 - -
Spst4g00152 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 420 IPR027417 -
Spst4g00152 467 MobiDBLite consensus disorder prediction 296 321 - -
Spst4g00152 467 SMART AAA_5 222 376 IPR003593 GO:0016887
Spst4g00152 467 ProSitePatterns AAA-protein family signature. 344 363 IPR003960 GO:0005524|GO:0016887
Spst4g00152 467 FunFam AAA-ATPase ASD, mitochondrial 178 370 - -
Spst4g00152 467 Gene3D - 371 444 - -
Spst4g00152 467 Pfam Domain associated at C-terminal with AAA 15 112 IPR025753 -
Spst4g00152 467 Gene3D - 175 370 IPR027417 -
Spst4g00152 467 Pfam ATPase family associated with various cellular activities (AAA) 227 373 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00152 Spst-Chr4 1476554 1477957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00152 204 419 Miscellaneous Gene Families AT3G02450 28.889 9.71e-11 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00152 4 1476554 1477957 Spst1g01283 1 15527602 15529107 PCT
Spst1g01282 1 15523466 15524995 Spst4g00152 4 1476554 1477957 PCT