Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00142 ATGGATCGCAGCAACACGTTTTCCTTTTCGTTCCTTTTGTTAACCCTGTTGTTGGGGTTTCACGCGTTCCTCGCTTCTGCTCAGGTCGAGGACGATGTTAGATGTCTCCGTGGTATCAAAGAAGCCGTTTCGGATACACAGGGCCACCTCGACACGTGGCGATTCGATAACACCACCGTGGGTTTCATCTGCGACTTCGTGGGTGTGTCTTGCTGGAACCAAAGAGAGAACCGGGTCTTGGGTTTGGACCTCGAACAGTTTAAACTTTCGGGTCGGATCCCCGAGGCTTTGAAGTACTGTGGGAAGAGCATTCAAAGGTTGGATCTAGCTTCAAATTCTTTCTCCTCCGAGATCCCATACGAGATCTGTAATTGGATGCCGTTTTTGGTTTCTATAGATTTGTCTGGTAATCAACTCTCTGGGCCTATTCCTCCCACACTTGGGAATTGTTCATATTTGAATGAGTTGGTATTGTCAGATAATCAGCTTTCTGGGTTAATTCCCTTTGAGTTTGGGAGTTTGGGTAGGCTCAAGAAGTTTTCTGTGGCCAATAATAGGCTTACTGGAACAATTCCTGAGTTTTTCCATGGGTTTGATAGGGAGGGTTTTGAGGGGAATAGTGGGTTATGTGGGGCTCCTCTTGGATCCAAGTGTGGTGGGATGAGTAAGAAGAATCTTGCTATTATTATTGCTGCTGGGGTTTTTGGTGCTGCTGCTTCATTGCTACTGGCTTTTGGCCTGTGGTGGTGGTACCACTTGAGTGGGAAGAGGAAGAAGAAGGGGTATGGGGTTGGTTCTAGTGCGGGTGTTGCTGCTGCTGCTGGTGATTGGGCTTTGAGGTTAAGAGGTTATAAGCTTGTGCAAGTTAGTCTCTTTCAGAAGCCTATAGTGAAGGTGAAGTTGGGGGATTTGATGGCTGCTACTAATAATTTCAGCGGGGAGAATGTTCTTTTTGCGACGAGGACCGGGACAACGTATAAGGCTGATCTTCCAGATGGTTCCACCCTCGCGGTGAAGCGGTTGAGTGCATGTAGGATTGGGGAGAAGCAGTTTGGGATGGAGATGAACAGGTTGGGGCAGGTTAGGCACCCGAATTTAGCTCCTCTGTTGGGGTACTGTGTTGTGGAGGACGAGAAGTTGTTGGTTTACAAGCACATGTCTAATGGGACGTTGTATTCGTTGTTGCACAAGAATGGTGGGGTGTTGGATTGGTTGATGAGGTTTAGGATTGGGTTGGGTGCAGCGAGGGGGCTTGCCTGGTTGCACCATGGCTGCCACCCGCCCATTATACAGCAGAACATTTGCTCCAATGTGATTCTTGTTGATGAGGAGTTTGATGCTCGGTTGATGGACTTTGGGCTAGCAAGGCTCATGGCTTCGGACTCAAATGGAAGTTTTGTGAATGGAGATTTGGGGGAGCTCGGTTACATCGCCCCGGAGTATCCGAGTACTTTGGTTGCTTCATTGAAAGGGGATGTGTATGGGTTTGGTGTTTTGCTTTTGGAGTTGGTGACCGGGAGAAAACCGCTTGATGTGAGCAATGGGGAGGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAACATGCATTCTAGTTTGGGGAGGATCAAGGATTGCATTGATAAAACCATATGTGGAAGAGGGCATGATGAAGAGATTCTGCAGTTTCTGAAAGTTGCCTTGAATTGTGTGGTTTCTCGCCCCAAGGATAGGTGGTCTATGTACCAGGTTTATCATTCCTTAAAGACCATAGCTAAAGACCAGAGTTTCTTTGATCATGATGATGACTTTCCATTGATCTTTGGTAAGCCAGAAAGTGAGGCAGCGTAG 1830 0.4765 MDRSNTFSFSFLLLTLLLGFHAFLASAQVEDDVRCLRGIKEAVSDTQGHLDTWRFDNTTVGFICDFVGVSCWNQRENRVLGLDLEQFKLSGRIPEALKYCGKSIQRLDLASNSFSSEIPYEICNWMPFLVSIDLSGNQLSGPIPPTLGNCSYLNELVLSDNQLSGLIPFEFGSLGRLKKFSVANNRLTGTIPEFFHGFDREGFEGNSGLCGAPLGSKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLSGKRKKKGYGVGSSAGVAAAAGDWALRLRGYKLVQVSLFQKPIVKVKLGDLMAATNNFSGENVLFATRTGTTYKADLPDGSTLAVKRLSACRIGEKQFGMEMNRLGQVRHPNLAPLLGYCVVEDEKLLVYKHMSNGTLYSLLHKNGGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARLMDFGLARLMASDSNGSFVNGDLGELGYIAPEYPSTLVASLKGDVYGFGVLLLELVTGRKPLDVSNGEEEFKGSLVDWVNMHSSLGRIKDCIDKTICGRGHDEEILQFLKVALNCVVSRPKDRWSMYQVYHSLKTIAKDQSFFDHDDDFPLIFGKPESEAA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00142 609 ProSiteProfiles Protein kinase domain profile. 311 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00142 609 SUPERFAMILY L domain-like 28 200 - -
Spst4g00142 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 273 385 - -
Spst4g00142 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 386 603 - -
Spst4g00142 609 FunFam Nuclear pore complex protein NUP107 29 193 - -
Spst4g00142 609 Gene3D Ribonuclease Inhibitor 29 220 IPR032675 -
Spst4g00142 609 Gene3D Phosphorylase Kinase; domain 1 271 385 - -
Spst4g00142 609 Pfam Protein tyrosine and serine/threonine kinase 332 519 IPR001245 GO:0004672|GO:0006468
Spst4g00142 609 Gene3D Transferase(Phosphotransferase) domain 1 386 600 - -
Spst4g00142 609 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 78 195 - -
Spst4g00142 609 SUPERFAMILY Protein kinase-like (PK-like) 288 581 IPR011009 -
Spst4g00142 609 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00142 Spst-Chr4 1423030 1424859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00142 12 607 Receptor kinase-like Gene Family AT3G28450 62.914 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Spst4g00142 PK_Tyr_Ser-Thr 9.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00142 - - gmx:100810378 1053.89