Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00136 ATGGGTGGCGATGGTGGTGACCGTAATAGTTCTATTTCCATGGTTATGAAGAAGAAGAAGAGTGGGTCTATTCGGTCCATTTTCATGCATGCTGATGGCCTAGATAGGTTTCTCATGATTTTGGGGTTGTTAGGAGCCATTGGTGATGGCATAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATTATGAACAATATTGGTGATTTTTCTAGCAGCACAGATAACAATTTCATCCATAGCATCAATAAGAATGCTGTGGTTTTGTTATATTTGGCTGGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTACTGTTGGACAAGAACTGGTGAAAGACAAGCTGCTAGAATGAGAGTCAGGTACCTAAAAGCAGTGTTGAGGCAAGAAGTTGCATACTTTGATTTGCATGTCACTAGCACATCTGAGGTCATCACCAGTGTCTCCAACGACAGCCTCGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAACTTTTTGATGAATGCCTCTATGTTTGTTGGGAGCTACATAGTGGCTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTTGTGGCTCTACTTGTGATCCCTGGTTTCATGTATGGGAGAACACTAATGGGGTTGGCTAGCAAGATAAGGGAAGAGTACAACAAGGCTGGTACAGTAGCAGAGCAGGCAATATCTTCCATCAGAACCGTTTACTCCTTCGTGGGGGAAACCAAGACCATAGATGCTTTCTCTGAAGCTCTACAAGGGTCAGTTGAGTTAGGACTGAGACAAGGCTTAGCAAAAGGCTTAGCTATTGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCCTATTATGGTAGCAGATTGGTCATGTATCATGGTGCTAAAGGTGGTACTGTGTTTGCTGTTGGAGCAGCCATAGCACTTGGAGGATTGGCATTAGGGGCTGGTTTGTCCAACGTGAAGTATTTTTCAGAGGCAAGCACTGCAGGAGAACGCATAATGGAGGTGATAAAAAGGGTTCCAAAGATTGATTCTGACAACATGGGTGGGGAGATTCTGGAGAAGGTTTCTGGGGAAGTTGAGTTTAAGCATGTGAATTTTGTGTACCCTTCAAGGCCAGACAGTGTGATTCTGAAGGACTTTTGCCTAAGGGTTCCTGCAGGGAAAACAGTGGCACTAGTTGGAGGGAGTGGGTCAGGAAAATCCACTGTGATATCACTTCTGCAGAGATTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTGACAGGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTGTTTGCAACCAGCATTAAGGAGAATATACTGTTTGGAAGAGAAGAAGCCACTGAGGAAGAGGTTGTGGAGGCTGCAAAAGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCAGGGGGACAAAAGCAAAGAATCGCCATAGCGCGAGCAATAATAAAGAAGCCACGAATTCTCCTGTTAGATGAAGCAACAAGTGCCCTAGATTCTGAATCCGAACGAGTTGTGCAAGAAGCACTCGACAAAGCAGCAGTGGGGCGCACCACAATCATCATTGCTCATCGATTATCCACCATAAGAAATGCAGATGTGATTGCTGTGATGCAAAGTGGGAAGATCATGGAAATGGGGTCACATCATGAACTCATCCAAAACGACAATGGCCTTTACACCTCACTAGTTCGTCTCCAACAAGCAACAAATGAGAAAGAAGACACCCTTTTTCATCCTCTTCCTCCTTCATCATTATCATCCATAGCAAACAAGGACATTCACAGCACAAGCAGTCGTAGGCTTTCTCTTGTGAGTCAATCTAGCTCTGTCAACTCAATCCCTCGTGTTGTTGTTGGTGGTGGTGGTGGTGATGATGTTGTTGAAGAGGTTGTGGAAGATAAGAAGCTGCCACTTCCCTCTTTTCGAAGGTTGCTAGCACTGAATATTCCTGAGTGGAAGCAAGCGTGTTTGGGGTGTTTGAATGCAGTGTTGTTTGGTGCAATTCAGCCTGTGTATGCGTTTGCAATGGGGTCGGTGATATCTGTTTACTTTCTCTCAGACCATGATGAGATAAAGAAGAAAACCAGGATCTACTCTCTTTGCTTTGTAGGGTTGGCTGTGTTCTCCTTGGTGGTTAATATCCTCCAACACTATAGCTTTGCTTACATGGGAGAGTACTTAACCAAAAGGATCAGAGAAAGAATGCTTTCCAAGATACTCACTTTCGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACTGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCTAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGACAATAGCTTTTACTATGGGCCTAATCATTGCATGGAGATTGGCCATAGTTATGATAGCAGTTCAACCCATTATCATAGCCTGTTTCTACACAAGACGTGTCCTTCTGAAGAGCATGTCTAGCAAGGCCATCAAGGCCCAAGATGAAAGTAGCAAGATAGCTGCAGAAGCTGTTTCCAACCTTAGAACCATCACAGCCTTTTCTTCCCAAGACAGAATTCTAAAGATGCTAGAAAAGGCCCAAGAGGGACCAAGTCATGAAAGCATTCGGCAATCATGGTTTGCAGGTGTTGGTCTTGCATGTTCCCAAAGCCTTACATTTTGCACTTGGGCCTTAGACTTTTGGTATGGGGGAAAGCTTGTGTTTCAAGGGTTCATCAATGCCAAGGCATTGTTTGAGACCTTCATGATCTTAGTGAGCACAGGTAGGGTCATTGCAGATGCTGGTAGCATGACCAATGACCTTGCCAAGGGGGCTGATGCTGTGGGCTCAGTTTTTGCAATCCTAGATAGGTACACAAAAATTGAACCTGATGACATAGATGGGTACAAGCCTGAAAAATTAACAGGGAAAATAGAGCTTCATGAGGTCCATTTTGCATACCCAGCTAGGCCCAATGTGATGATCTTTCAAGGCTTCTCAATCAAAATAGATGCAGGTAAATCAACAGCATTGGTAGGGCAAAGTGGGTCTGGCAAATCAACAATAATAGGCCTAATACAGAGATTCTATGACTCACTAAAAGGGACAGTGACCATAGATGGTAGAGACATAAAATCATATCACCTTAGGTCACTAAGGAAGCACATTGCTCTTGTAAGCCAAGAGCCAACATTGTTTGGTGGGACCATAAGGGAAAATATAGCATATGGAGCATCTAACAAGGTTGATGAAACTGAGATCATAGAAGCAGCAAGGGCAGCTAATGCTCATGATTTCATTGCAAGCCTAAAGGATGGCTACGACACATGGTGTGGAGATAGAGGAGTGCAACTCTCAGGGGGTCAAAAACAAAGAGTTGCAATAGCAAGAGCCATATTGAAGAATCCAGAAATGTTGCTGCTGGATGAAGCCACCAGTGCACTTGATAGCCAATCAGAGAAATTGGTGCAAGATGCTCTGGAGAGGGTGATGGTGGGGAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACCATACAAAACTGTGATCTAATTGCTGTGTTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCACTCCTCTTTGTTGGCTGAGGGACCAAGTGGAGCTTATTACTCTTTGGTCAGTTTACAAAGAAGACCAACAAAACATGAATCTTAA 3789 0.4415 MGGDGGDRNSSISMVMKKKKSGSIRSIFMHADGLDRFLMILGLLGAIGDGIGTPLVLFITSKIMNNIGDFSSSTDNNFIHSINKNAVVLLYLAGGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVGSYIVAFALLWRLTLVGFPFVALLVIPGFMYGRTLMGLASKIREEYNKAGTVAEQAISSIRTVYSFVGETKTIDAFSEALQGSVELGLRQGLAKGLAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDNMGGEILEKVSGEVEFKHVNFVYPSRPDSVILKDFCLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIDRLQLKWLRSQMGLVSQEPALFATSIKENILFGREEATEEEVVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVMQSGKIMEMGSHHELIQNDNGLYTSLVRLQQATNEKEDTLFHPLPPSSLSSIANKDIHSTSSRRLSLVSQSSSVNSIPRVVVGGGGGDDVVEEVVEDKKLPLPSFRRLLALNIPEWKQACLGCLNAVLFGAIQPVYAFAMGSVISVYFLSDHDEIKKKTRIYSLCFVGLAVFSLVVNILQHYSFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVTIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFQGFINAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFAILDRYTKIEPDDIDGYKPEKLTGKIELHEVHFAYPARPNVMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIQRFYDSLKGTVTIDGRDIKSYHLRSLRKHIALVSQEPTLFGGTIRENIAYGASNKVDETEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRVAIARAILKNPEMLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLAEGPSGAYYSLVSLQRRPTKHES 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00136 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Spst4g00136 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1254 IPR027417 -
Spst4g00136 1262 Gene3D ABC transporter type 1, transmembrane domain 27 609 IPR036640 GO:0005524|GO:0016020
Spst4g00136 1262 SUPERFAMILY ABC transporter transmembrane region 27 348 IPR036640 GO:0005524|GO:0016020
Spst4g00136 1262 ProSitePatterns ABC transporters family signature. 1154 1168 IPR017871 GO:0005524|GO:0016887
Spst4g00136 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1251 IPR003439 GO:0005524
Spst4g00136 1262 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Spst4g00136 1262 FunFam Putative ABC transporter B family member 8 657 1002 - -
Spst4g00136 1262 Pfam ABC transporter 1033 1182 IPR003439 GO:0005524
Spst4g00136 1262 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Spst4g00136 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00136 1262 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Spst4g00136 1262 Gene3D - 354 603 IPR027417 -
Spst4g00136 1262 Gene3D ABC transporter type 1, transmembrane domain 661 1002 IPR036640 GO:0005524|GO:0016020
Spst4g00136 1262 SUPERFAMILY ABC transporter transmembrane region 671 998 IPR036640 GO:0005524|GO:0016020
Spst4g00136 1262 PANTHER ABC TRANSPORTER B FAMILY 17 741 IPR039421 -
Spst4g00136 1262 FunFam ABC transporter B family member 4 354 609 - -
Spst4g00136 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00136 1262 FunFam ABC transporter B family member 1 26 362 - -
Spst4g00136 1262 FunFam ABC transporter B family member 4 1004 1260 - -
Spst4g00136 1262 CDD ABC_MTABC3_MDL1_MDL2 1014 1254 - -
Spst4g00136 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 602 IPR027417 -
Spst4g00136 1262 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 997 - -
Spst4g00136 1262 SMART AAA_5 1041 1234 IPR003593 GO:0016887
Spst4g00136 1262 SMART AAA_5 391 577 IPR003593 GO:0016887
Spst4g00136 1262 Pfam ABC transporter transmembrane region 39 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00136 1262 Pfam ABC transporter transmembrane region 693 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst4g00136 1262 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 337 - -
Spst4g00136 1262 Gene3D - 1004 1261 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00136 Spst-Chr4 1369217 1375541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00136 1 1255 Calmodulin-binding Proteins AT2G36910 44.714 0.0 1075