Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00135 ATGATGGAGCTGTTGCAGCTTTCTGAGAAAAAAAAAATCTGGGAAACTCGGATGAAGAGAGCAAGGGATGATATTTACTCGGCATCTGCCTCTCAATTCAAACGCCCTTTTTCTTCGTCGCGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGCGGAGGGGGAGGAGGAGGCGGAGGGGGAGGTGGCAATGGCGGTGTTGTTGGTGGGGGAGCAGCTACTTCCCAGAAACTGACCACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGTTGTTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCTTGCCAAAAGGTTATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAGCGCTTCCAAAGTGATGAGCATGTTTATAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGCGAAGTTTATAGTGAGGTTGCTACCCTTTTCAAGGACCATCGAGATTTGCTGGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCTCACAGCATGCTCCATATAACCGGAATTCAGTGCAGCGCTTTAATGAGCGTAGTTCTATGGCTCCAATGATGCGCCAAATACCACCAGACAAGGCACAACGATATCGACGAGACAGACTTCCTTCTCATGATCGGGATATGAGCGCTGAACACCCTGACATGGATGATGACAAAACAATGTTGAACATACACAAGGAGCAGAGGAAGCGTGAAATAAGAGATAGGAGAATGCGTGATCAGGATGAGAGAGAACATGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCCGACTTTCCTTCTTATGATGACAAAGATACCTTGAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAGTGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGACGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGGGTCATGAGTAAAAAGTCCCTATCTACAGATGCTCATTTAGCAAGGTCATCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGATTGTAAACGCTGTACTCCCAGCTATCGGCTTTTGCCTGCAGATTATCCAATCCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTGTTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTATTCTTTCAAACACATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATCAGTGAAAACAAAATCAGTGTGGAGACTCTGAACCGCATTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTGTATGGTGATCATGGTCTTGACGTTATAGACATATTGCGGAAAAACCCAACCCATGCTCTGCCTGTAATATTGACCCGGCTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATTCTAAAAATCACTACAAGTCACTGGATCATCGTAGCTTCTATTTCAAACAACAGGATTCAAAGAACTTGAGCACAAAATCTTTGGTTGCTGAAATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAAGATGATATTATTCAGTCTATTGCCGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGTTGGGATTCATGAAGACCTGTATAAACTTGTTCGTTATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTTTTGGAGCCAATGCTTGGTGCTCCTGCCCAGTCTCATAGAATAGAAAGAGCGGAGGATAGAAAAACTGGGCATAATGTTCGTAATTTTGGTGCACCAAATATAGGGGGTGACAGAAGCCCTCATGGTGACTCTCTTTCAATGAATTCAAGGTTACCCAAATCTGATAAGAATGAGGCTGATGGTAGAGTAACTGAAGCAAAGAATGTTCACCGCACAAGTGTAGCAACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACTTGTTTGTAGAGATGACCCATTAATGGATAAAGGACTAAAAAATGTAGAATGCAATGATAAAGCCTCCGGATTTAGCAAACAATTTGCATCTGATGATCAAGGAGCTAAAAGCAGTGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACCAACCTAGATGTATCACCAGCCCGTGCCCTGACTCCATCACGACCTACTGATGCTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATCGGTGGAGGGATGTGACATGGCAACTTCAGTACCTGTGGCCAATGGTGTTCTAAGTGAGAGCAGTAAAGTTAAAACTCATGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAATGGGGACTCTGAGGAGGACAACTTTGTTGTCTATGGAGATTCAAATTTGCAGTCAATGGCTAAATCAAAGCACAACTCTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGTAGTGAATCTGCTGGTGATGAATGCTTTCGGGAAGATCATGAAGAGGAGGAAGATATAGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTTTACCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCATCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTTTATGGAAATGATGACTTCTACGTGCTTTTTAGGCTTCATCAAACTCTCTATGAGAGGATCTTATCAGCAAAAACAAATTCAATGAGCGCAGAAATGAAATGGAAAGCAAAAGATGCCAGTTTACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAATCAGTCATATGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTCGCAACTGATGAGGTAGACAGTAGGCTTCTACAATTATATGAATATGAAAAGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGATAATATTTATCGGTTACAATGTTCCTCTAGCCCCTCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCCATTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCATAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGACTTCTTCTTCCGACCGAGAAAGAAGAGACGAACACCATCAGGGGCCACAACCTCCCAGTTTCGTAGTAGGGATAGAGAGGAAAGATTCCGGAAATTGTTGGCATGCTCATAG 4245 0.4113 MMELLQLSEKKKIWETRMKRARDDIYSASASQFKRPFSSSRADSYGQNQVPGSGGGGGGGGGGGGGNGGVVGGGAATSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSSQHAPYNRNSVQRFNERSSMAPMMRQIPPDKAQRYRRDRLPSHDRDMSAEHPDMDDDKTMLNIHKEQRKREIRDRRMRDQDEREHDLDNSRDLNLQRFPDKKKSVKKAEGFGMASDFPSYDDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSSGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARSSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNISENKISVETLNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDVGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPMLGAPAQSHRIERAEDRKTGHNVRNFGAPNIGGDRSPHGDSLSMNSRLPKSDKNEADGRVTEAKNVHRTSVATNDKENGSVGGELVCRDDPLMDKGLKNVECNDKASGFSKQFASDDQGAKSSVSIAIRGENSLNRTNLDVSPARALTPSRPTDADDSVAKSQVANVPSVEGCDMATSVPVANGVLSESSKVKTHDESAGPCKIEKEEGELSPNGDSEEDNFVVYGDSNLQSMAKSKHNSERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSSVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTNSMSAEMKWKAKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDSRLLQLYEYEKSRKPGKLNDSVYHANAHVILHEDNIYRLQCSSSPSRLSIQFMDNMNEKPELFAISIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTPSGATTSQFRSRDREERFRKLLACS 1414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00135 1414 FunFam Paired amphipathic helix protein SIN3 361 435 - -
Spst4g00135 1414 FunFam Paired amphipathic helix SIN3-like protein 162 233 - -
Spst4g00135 1414 Gene3D Paired amphipathic helix 85 147 IPR036600 GO:0006355
Spst4g00135 1414 MobiDBLite consensus disorder prediction 1005 1024 - -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 790 831 - -
Spst4g00135 1414 Gene3D Paired amphipathic helix 362 435 IPR036600 GO:0006355
Spst4g00135 1414 Gene3D Paired amphipathic helix 162 234 IPR036600 GO:0006355
Spst4g00135 1414 ProSiteProfiles PAH domain profile. 79 149 IPR003822 GO:0006355
Spst4g00135 1414 MobiDBLite consensus disorder prediction 233 339 - -
Spst4g00135 1414 ProSiteProfiles PAH domain profile. 364 433 IPR003822 GO:0006355
Spst4g00135 1414 PANTHER SIN3B-RELATED 79 1274 IPR039774 GO:0003714
Spst4g00135 1414 MobiDBLite consensus disorder prediction 268 339 - -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 37 66 - -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 1025 1045 - -
Spst4g00135 1414 Pfam Paired amphipathic helix repeat 386 430 IPR003822 GO:0006355
Spst4g00135 1414 Pfam Paired amphipathic helix repeat 102 146 IPR003822 GO:0006355
Spst4g00135 1414 Pfam Paired amphipathic helix repeat 186 230 IPR003822 GO:0006355
Spst4g00135 1414 MobiDBLite consensus disorder prediction 1061 1081 - -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 37 51 - -
Spst4g00135 1414 ProSiteProfiles PAH domain profile. 163 233 IPR003822 GO:0006355
Spst4g00135 1414 FunFam Paired amphipathic helix protein Sin3 85 147 - -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 456 478 - -
Spst4g00135 1414 SMART hdac_interact2seq4b 497 597 IPR013194 -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 956 1097 - -
Spst4g00135 1414 Coils Coil 4 24 - -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 233 257 - -
Spst4g00135 1414 Coils Coil 570 590 - -
Spst4g00135 1414 SUPERFAMILY PAH2 domain 367 433 IPR036600 GO:0006355
Spst4g00135 1414 Pfam C-terminal domain of Sin3a protein 1133 1380 IPR031693 -
Spst4g00135 1414 MobiDBLite consensus disorder prediction 959 980 - -
Spst4g00135 1414 SUPERFAMILY PAH2 domain 160 232 IPR036600 GO:0006355
Spst4g00135 1414 Pfam Sin3 family co-repressor 499 591 IPR013194 -
Spst4g00135 1414 SUPERFAMILY PAH2 domain 77 148 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00135 Spst-Chr4 1356717 1369103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00135 63 182 WRKY Transcription Factor Family AT4G12020 49.587 5.74e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst4g00135 Sin3a_C 3.9e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00135 K11644 - gmx:100807181 2471.43