Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00129 ATGGAGAACTCGGAGAAGGTGGTGGCTGTGATCATGGTGGGTGGGCCCACCAAAGGGACAAGATTTCGGCCTCTTTCCTTCAATATTCCCAAGCCCCTTTTCCCTTTGGCTGGCCAGCCAATGGTTCACCATCCTATTTCTGCTTGCAAAAGGATACCCAATTTGGCTCAAATATATCTTATTGGATTCTACGAGGAGCGAGAATTCGCTCTATATGTCTCTTCAATCTCGAATGAGCTGAAATTACCAGTAAGATATTTGAGAGAGGATAAACCGCATGGTTCAGCAGGTGGCCTTTACTACTTCAGAGATATTATCACGGAAGACAGTCCATCACATATCTTTCTGTTAAACTGTGATGTTTGCTGCAGTTTCCCACTACCAGCAATGCTTGATGCCCATAAAAGATATGGTGGGATGGGGACAATGTTGGTGATCAAGGTTTCAGCTGAATCTGCGAACCAATTCGGTGAGTTGATTGCTGATCCAACCACTAACGAGTTACTGCATTATACCGAGAAACCTGAGACATTTGTCAGTAATTTGATAAATTGCGGTGTCTATGTTTTCACCCCTGATATTTTTTCTGCCATCCGAGAAGTATATATGAATAGAGAAGGCAGAGCTAATCTACGTCGTCTCTCCAACTTTGAAACGCTCCAATCTGCCACAAGGACTATTCCTGTTGATTTTGTGAGATTGGATCAAGATATTTTATCACCTCTAGCTGGGAAGAAGCAATTTTATACATATGAAACAATGGATTTCTGGGAGCAAATTAAAACTCCAGGAATGTCATTGAAATGCTCAGAATTGTATCTTGCTCAATTCCGGTATACTTCACCGGATCTTTTGGCCAGTGGAGATGGTAATAAGAGTGCTATAATTTCTGGTGATGTATATATTCATCCGTCTGCAAAAGTTCATCCATCCGCAAAGATTGGTCCCAATGTTTCCATCTCAGCAAACGTTCGTGTAGGTGCTGGTGTCAGGTTAAGTGGTTGTATAATCTTGGATGATGTTGAAATTAAGGAAAATGTTTTTGTCACAAACTCCATTATTGGATGGAAGTCATCACTTGGAAGATGGTCACATGTGCAGGCTGATGGTAACTACGATGCAAGACTTGGCACAACCATCTTAGGCGAAGCTGTAACGGTTGAAGATGAAGTGGTAGTGTTCAACTGCATTGTGCTTCCACATAAAACTCTTAATGTCAGTGTGCAAGAAGAAATCATCTTGTAA 1245 0.4169 MENSEKVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFYEEREFALYVSSISNELKLPVRYLREDKPHGSAGGLYYFRDIITEDSPSHIFLLNCDVCCSFPLPAMLDAHKRYGGMGTMLVIKVSAESANQFGELIADPTTNELLHYTEKPETFVSNLINCGVYVFTPDIFSAIREVYMNREGRANLRRLSNFETLQSATRTIPVDFVRLDQDILSPLAGKKQFYTYETMDFWEQIKTPGMSLKCSELYLAQFRYTSPDLLASGDGNKSAIISGDVYIHPSAKVHPSAKIGPNVSISANVRVGAGVRLSGCIILDDVEIKENVFVTNSIIGWKSSLGRWSHVQADGNYDARLGTTILGEAVTVEDEVVVFNCIVLPHKTLNVSVQEEIIL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00129 414 FunFam Putative GDP-mannose pyrophosphorylase 283 411 - -
Spst4g00129 414 FunFam Mannose-1-phosphate guanyltransferase alpha 6 277 - -
Spst4g00129 414 CDD M1P_guanylylT_A_like_N 9 273 - -
Spst4g00129 414 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 8 414 - -
Spst4g00129 414 Pfam Nucleotidyl transferase 9 212 IPR005835 GO:0009058
Spst4g00129 414 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 276 IPR029044 -
Spst4g00129 414 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 356 IPR029044 -
Spst4g00129 414 Gene3D Hexapeptide repeat proteins 286 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00129 Spst-Chr4 1321422 1326345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00129 19 354 Eukaryotic Initiation Factors Gene Family AT2G34970 22.135 9.99e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00129 K00966 - gmx:100782402 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00129 4 1321422 1326345 Spst4g00129 4 1321422 1326345 ECH