Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00118 ATGGCGTCAGGCGGAACCGTAGCTTTTCCAGATTTGGGTAAACACTGCCAGCACCGCGATTGCCACCAGCTCGATTTTCTTCCTTTCACCTGCGACGGTTGCCGCCAGGTGTTTTGTTTGGAGCACAGATCCTACAAGTCCCACGCCTGCACGAAATCCGACCACAACAGCAGAAAAGTGGTTGTCTGCCAAACATGTTCCATGTCCATTGAGACCACCGGTCTCGTGGGACAGGGCGAGGAGGCAATTTTGGAGAAGCACCTCAAGTCTGGTGACTGTGATCCCACCAAGAAGAAGAAACCCGTTTGCCCTGTCAAGTGCTGCAAGGAGGTTTTGACTTTCTCCAACAACAGCACCTGTAAAACTTGTCACATGAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGTAGCAGAGGAGTTTCAGCTTCTTCCTCAGCTTCAGTTGCTAATGGTGGATGGAACAATCGATTTTTGGGTACTCTGGCTTCAAGGACTGGACAGGAATGTGCCAAAACTGGTGCCACTCGTTCTACCTCTCCTCCTAGCTCTCCTTCTGTTTTCGATCTATATATACATGGCACAGGTGGAACCGAAACTTTTCCAGATTTGGGGGAACACTGCGAGCACCGCGATTGCAACCAGCTCGATTTTCTTCCTTACACCTGCGACGGTTGCCAACGGGTGTTTTGTTCAGAGCACCGATCCTGTAAGTCCCACGCGTGCCCAAAATCCGACCTAAGCAGAAAAGTGATTGTTTGCCAAACATGTTCCATGTCCATTGAGACCACAGGCTACGTGGGACAAGACGAGGAGGCAATCTTGGAGAAACACCACAAGTCTGGTAACTGTGACCCCACCAAGAAGAAGAAACCCGTTTGCCCTGTCAAGGGCTGCAAAGAGATTTTATCAATCTCCAACACCAGCACATGTAAAACTTGCAACCTGAACGTGTGCCTCAAACATCGTTTCCCCTCTGATCATGCTTGTAACAGAGGAGTTTCAGCTTCTTCCTTACCTTCTGCTGCTAATGGTGGGTGGCAGAATTTTCTAAGTTGCTTTTGTTTCAAGAACAGAACAACAAAGAAGGGCCAAAACTAG 1107 0.4923 MASGGTVAFPDLGKHCQHRDCHQLDFLPFTCDGCRQVFCLEHRSYKSHACTKSDHNSRKVVVCQTCSMSIETTGLVGQGEEAILEKHLKSGDCDPTKKKKPVCPVKCCKEVLTFSNNSTCKTCHMKVCLKHRFPADHACSRGVSASSSASVANGGWNNRFLGTLASRTGQECAKTGATRSTSPPSSPSVFDLYIHGTGGTETFPDLGEHCEHRDCNQLDFLPYTCDGCQRVFCSEHRSCKSHACPKSDLSRKVIVCQTCSMSIETTGYVGQDEEAILEKHHKSGNCDPTKKKKPVCPVKGCKEILSISNTSTCKTCNLNVCLKHRFPSDHACNRGVSASSLPSAANGGWQNFLSCFCFKNRTTKKGQN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00118 368 SMART AN1_Zf_4 296 337 IPR000058 GO:0008270
Spst4g00118 368 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Spst4g00118 368 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Spst4g00118 368 SMART AN1_Zf_4 210 249 IPR000058 GO:0008270
Spst4g00118 368 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Spst4g00118 368 SUPERFAMILY AN1-like Zinc finger 95 147 IPR035896 -
Spst4g00118 368 SUPERFAMILY AN1-like Zinc finger 288 335 IPR035896 -
Spst4g00118 368 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Spst4g00118 368 Gene3D - 81 154 IPR035896 -
Spst4g00118 368 Gene3D - 271 347 IPR035896 -
Spst4g00118 368 ProSiteProfiles Zinc finger AN1-type profile. 290 340 IPR000058 GO:0008270
Spst4g00118 368 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 186 - -
Spst4g00118 368 SUPERFAMILY AN1-like Zinc finger 202 246 IPR035896 -
Spst4g00118 368 SUPERFAMILY AN1-like Zinc finger 10 60 IPR035896 -
Spst4g00118 368 Pfam AN1-like Zinc finger 210 247 IPR000058 GO:0008270
Spst4g00118 368 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Spst4g00118 368 Pfam AN1-like Zinc finger 103 140 IPR000058 GO:0008270
Spst4g00118 368 Pfam AN1-like Zinc finger 296 333 IPR000058 GO:0008270
Spst4g00118 368 Gene3D - 2 69 IPR035896 -
Spst4g00118 368 Gene3D - 196 262 IPR035896 -
Spst4g00118 368 ProSiteProfiles Zinc finger AN1-type profile. 204 252 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00118 Spst-Chr4 1169412 1174167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00118 198 361 C2H2 Transcription Factor Family AT3G28210 56.627 7.10e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00118 - - gmx:100500384 324.709