Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00117 ATGGAGATTCAACAAACCCTGAAGCTCACTATCCACAAAAAATGGCCATCATCACCCAAGAAAACACCAAAAGATTCAGAACCAATAACCACTACTACAACTCCAAAGCTGAAATGGAAGAAAATTTTCTTTCACCCCAAAACCAAAACCAAAATCCAAACCCCCCCAGATGAGTTCCTCTGCCCCGTTTCCCGTTCCCTCATGTTCGACCCCGTCATCGTCTCCTCCGGCCATTCCTTCGAACGCTCCTCCGTTGAAGCCTGTAAAAATCTCAACTTTACCCCCCAGCTCCCGGACGGCACCACCCCCGATTTCTCCACCCTCATCCCTAACCTCGCCCTCAAATCCGCCATCCTCAAATGGTGCCACACCACCCACACACCACCTCCTCTCTCACACAACAACCTCGTACAATCCTCAATCCCCCCTAACAGAAACCTCGTACAACAAACTTCAATCTCCCCGAACACCCCCAGCACAAACCTGGTACAAACCTCGATCTCCCCAGAAGTAAAACACTCCGTCAGAGATCCGATCCTGGATTCCCTCGACGACAACCCACCATCGAGCAACCTCCGTCGTCACGCAGAAACCGAGGTGCCCATAAGACCAACACACCTGTACACGAGCTCCGAGGAATCCATAGCCACAACCTCAGCCTCAACGCCGCCGTTTCAGCTCGCCACGCGCCCCAGTTGCTGCTACTATTACTCTTCCCCTTCCTCGTCCGAAATGGAACCTGCTGCAACCCCAGAAGAAGAAGAAATCATGGCAAAGCTCAAAAACCCACAACAGAACATAATCGAGGAAGCGCTTCTCTCTTTGAGAAAACTCACCCGGGTGAGAGAAGAAACCCGGGTCCAACTCTGCACCCCGCGGTTGCTCTCTGCGTTACGCTCCCTCGTTTTGTCGAAACACGTGAACATTCAAGTGAACGCTTTGGCTTCGGTGGTGAACCTTTCTCTGGAGAAGAGTAACAAAGTGAAGATCGTGCGGTCGGGGATGGTACCACCATTGGTCGAGGTTCTGAAATTTGGATCCCCTGAGGCGCAGGAACACGGTGCGGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGGGTTTTGGGTGGTTTGGGTCCGTTGCTTCATATGCTCCGAGTCGAGAGCGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTGAGTATGGTTAAGTCGGGTCACATGACGAATCGGGTTTTAATGATTTTGGGGAACTTGGGTTCCGGGTCGGACGGGCGGGCCGCGATGTTGGATGCCGGTGTGGTGGAGTGTTTGGTCGGGTTGCTTAGTGGGCCCGAATCACCCACCGGGTCGACTCGGGAGAGTTGTGTGGCGGCAATGTACGCCTTGAGTCACGGCGGTTTGAGGTTTAAGGCGGTGGCAAAGGCCGCGGGGGTGGTGGAGGTGTTGCAAAAGGTGGAGAAGGTGGGGAGTGAGAGGTCTAGGAATAAGGTGAGGAAGATTTTGGAGATTATGAGGGCCAAAGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGTTGCTTGACTCGGGGTTGGGTTGCCGAACTCGGATCCGGATCGGCGGCGGGTTGAACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1710 0.5351 MEIQQTLKLTIHKKWPSSPKKTPKDSEPITTTTTPKLKWKKIFFHPKTKTKIQTPPDEFLCPVSRSLMFDPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLSHNNLVQSSIPPNRNLVQQTSISPNTPSTNLVQTSISPEVKHSVRDPILDSLDDNPPSSNLRRHAETEVPIRPTHLYTSSEESIATTSASTPPFQLATRPSCCYYYSSPSSSEMEPAATPEEEEIMAKLKNPQQNIIEEALLSLRKLTRVREETRVQLCTPRLLSALRSLVLSKHVNIQVNALASVVNLSLEKSNKVKIVRSGMVPPLVEVLKFGSPEAQEHGAGALFSLSLEDDNKTAIGVLGGLGPLLHMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKSGHMTNRVLMILGNLGSGSDGRAAMLDAGVVECLVGLLSGPESPTGSTRESCVAAMYALSHGGLRFKAVAKAAGVVEVLQKVEKVGSERSRNKVRKILEIMRAKEVEEEDVDWEELLDSGLGCRTRIRIGGGLNESSANSAEF 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00117 569 Pfam U-box domain 56 124 IPR003613 GO:0004842|GO:0016567
Spst4g00117 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 130 IPR013083 -
Spst4g00117 569 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Spst4g00117 569 FunFam RING-type E3 ubiquitin transferase 251 527 - -
Spst4g00117 569 SMART arm_5 364 404 IPR000225 GO:0005515
Spst4g00117 569 SMART arm_5 323 363 IPR000225 GO:0005515
Spst4g00117 569 SMART arm_5 444 487 IPR000225 GO:0005515
Spst4g00117 569 SMART arm_5 405 443 IPR000225 GO:0005515
Spst4g00117 569 SUPERFAMILY ARM repeat 257 517 IPR016024 -
Spst4g00117 569 MobiDBLite consensus disorder prediction 178 198 - -
Spst4g00117 569 SUPERFAMILY RING/U-box 49 124 - -
Spst4g00117 569 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Spst4g00117 569 PANTHER U BOX DOMAIN-CONTAINING 50 528 - -
Spst4g00117 569 MobiDBLite consensus disorder prediction 8 32 - -
Spst4g00117 569 FunFam RING-type E3 ubiquitin transferase 13 130 - -
Spst4g00117 569 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Spst4g00117 569 Gene3D - 249 526 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00117 Spst-Chr4 1163796 1165505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00117 48 569 U-box Gene Family AT5G40140 54.426 2.85e-172 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00117 - - gmx:100798675 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00117 4 1163796 1165505 Spst9g02261 9 52625522 52627120 ECH
Spst4g00117 4 1163796 1165505 Spst4g00117 4 1163796 1165505 ECH
Spst4g00117 4 1163796 1165505 Spst1g01277 1 15484029 15488865 PCT