Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00103 ATGCAGAAGACACAGCGATCGCTCGATCTGGAACGTGAAGAAGAATCCTTCCCCTTTCCGCAGCCGAGAATTGGGAGCGCGCTTCCAAATCTAGGGTTTCGAGGACGAGGCGTGCGAATTCGATTTCGAATTGATGTTTCTTTTCAGGGACGAAGCTGGGATCGACTTGGAAGATGGAGGATTATGCATGGGTGTGTTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTTTTCAAGCCACCCAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTAACTTATGATAAACAAGAAAGTCCTAGTTTAGAAGTGCATTGGCTTTACCGACCTGCTGATTTGAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCACCAAACGAAGTTTTCTATTCCTTTCACAAGGATGAAACACCTGCTGCATCCTTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAATTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAACATCAACACAGTCATTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCCTTTGGTGTGCAGGGTAAGGGTAAAAAGAGAGAGCGAGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGATAGAAGATGGAGATTCTGGTCCGTTTAGACCAGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAGAAACTGGTACAGCTTATGCAACCTGATAGTGCAGATAAAAAAATAGATTTACCTGGGCGTATAATGCTTGTTGATGTAATTGCATTTACGGACCGCTATGACTGTCTTGGCTGGTTTGTACAGCTCAGGGGTCTGCCTGTGTTGGACGAATGGCTGCAGGAGGTCCATAAGGGCAAAATTGGTGATGGAAATGTGCCCAAAGAAAGTGATAAGTCTGTTGATGATTTTTTGTTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAAACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGCACACACAAAAATGCTGAAATTCAGAGGAAAGCCAGGAGTTTAGTAGACACATGGAAAAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCAGAGTCTCCTCATGTTGGAAATAGGAAAACAGGGGGATCGTCTGATAATGTTGCAAAGAGCTCTGCAATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAATTAAGCTCCGGAGAAGCTATGTCCAAATCTTCATCTCCTGGCTCTACTAAATCAATGACTACCTCAGCAGGCAGTAACTCAAAAGATCAGAACAGTAAAGTCTTTGTTGGAGCTGCGACGTCAGATCTACCTCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGCCAATCTCAAAATAACAGTATAACTTGTTCAAGTGAACATGCTAAAACTATTGGTTCTTGCAGGGAAGATGCCAAGAGCTCCACTGCAGTGTCAATGAGTGTGAGCAAAATTCAAGGTTGTGCATCTCGAACTCGAAAGTCAAGCAATGGTCTACATGGGGCTGGTGTTGCAGTAGGTCAGAAGGAGCACAACTCTGCAAAAAATTCAACTAGAAATTCACCTTCTGAAAAAGTATCACCAACTCGAGTATCCCATGAAAAGTTGGCTGACCAGCCCCTTACTGATCAAGGGAATAACCAGCGATTGATTCTTAGGTTGCCAAACACTGGTCGCAGTCCTTCAAGGGGAGCTAGTGGGGGCTCTTTCGAAGAACCAGCTACCACATGCAGCAAAGCTTCGTCTCCTGCAGACCGAAATGATAATCAAGACAGAAGAGCCAAAACGAAAACTGAGTGCTTGCTGACCCATGTGTCAAATATGATGAATGAGACCTGTGATGCTAATGAAGCTGTGATGGGTGGTGATGAAGGTAAGGGCACTCCAGTAGTTGATGAGCGATGCAGGGAAAATGAAGATGGTGAAAAGGTAGTTGAAACATCAAAACCTACTAGTTTGCCATCTGGGTTTGTTTCCAGATCTGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGTGCATCCATATCTCATGGAGATGATGGAATGAACCTGCTAGCTACTGTGGCTGCTGGTGAAATATCCAGATCTGAAAATGCATCACCTGCGACATCCCCTGAGAGAAAGTCTCCTTCAGATGAACTGTGCTCCGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAACAGCTGTTCGCACTCTTTCAGAGTTAAATGGTAGGGCTACAGGAGATCATCCATCGAATACAGTTGATTCATTACAGATAAAAAGTGAGTTGAGGCAGCCTGCCACGACACAGTCACATGGTTTTCCAGGAGAGGGTGAAATCATTTCATCCTGCCATGACACTCATATAAATATCTCCCCTTCAGATTTGTCACAAAATGTTGAAGGTCCATGCTTACGGCCCGAAACAAAAGAAGATACTTCTGTTGCTACATTGCCAGTTAAAAAGGAGAGTAATGCAGACCCTGGAATTTCTGACTCTAAATTAAGGCCTAGTGCCTGCTCTTTTGATGATGATCAGAAGGTTGATCACATGAAAGAGGAAATCACTGAGAATGAGAAAATGTTGGTTTCAAAACCTGTTACAAATGTTGAGTCAGAAAACGAATCAGGTGAAAAACAGCCCGAGTCATCTTCAGGTGTAGATAATGAGAACCCGACTAGTGTAGAGAAAGCAACAGGTTCAGGAATACTAGTACAAAAGGCCTCTCCAGCTGCTGAAAACTGTGAGTCTATATATTTGAAAAAGGAGTCACCTGCTTCTGGTAATGCATTAATGGTACCCAGGGATGAAAATGCTAATGACATGAAGTCGGTTGTGAGTGAGTCTGATGTAAGACGAATGGAGCAGGATTCTTCCGTTCCAGATGATGCTAATGAATGTGCTGAAGATAACATGGGTAGAAAGGAGGCCATTGGTCAGTATTGTGCTCCGTCAGTTCAGCCAGAGTTACCAACAATGTCTGGGAAAGAGAATGAAGTGTTCAAATCATGTGAGCAAAACCTAGATTCAAATTCATCTGAAGTGGCAGGAGAGAGGCATGCATGTTCTGCTGGTGCTGATACAGCTGTAAAACTCAACTTTGATTTAAACGAAGGCTTTCCTGTTGATGATGTTAGCCAAGGGGAGATTGCTAGACAGGAAGATACTATCACGTCATCTGCAGTTCATGTTCCTTGCCCGTTGCCTTTTCCTATTTCGTCCATCTCTGGTGGCTTCCACACTTCAATTACAGTAGCATCCGCTGCCAAAGGGCCTGTTGTTCCACCGGAAAACCCATTGAGGGTCAAGGGGGAGCTTGGATGGAAAGGGTCTGCTGCTACCAGTGCATTTCGACCAGCTGAGCCTAGGAAAAATGCTGAGACGCAGTCTTCTACTAATGATAATACTTCCGTTGATGTCACTTGTATCAAACAAAGTCGTCCTCCCTTGGATTTTGACTTAAACGTGGCAGATGAAAGATGTTTTGAGGATGTTGGTTCACATGGTTCTTTGGAATCTGGACCACATGATCGAAGTGTGGGTCTTGATCTTGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTATTAGTAAGTTGGATATTCCTTCTTTACCAAGCAAGCCTTCATTGTCAAGTGGGTTGTCTAATGGTGGAAGCGTCTCAAGAGATTTTGACTTAAATAATGGGCCAGGCCTTGAAGAAGTTGGTAGTGAAGTCCCACCACGTAGTCAGCAGATGAAAAATACAGTACCATTTCCAACTGCTATTCATAGCACGAGAACAAACAATGCTGAATATGGGAGTTATTCTGCTTGGTTTCCTCCAGGCAATTCCTATTCTGCAATTACTGTCCCGCCACTTCTGTCTGGTAGAGGGGAGCAGAGTTATGTTGCTGGTGCTGGGGCACAACGAATAATGGGTCCTACTGGTAGCACTCCTTTTGGTCCTGAAATCTACCGGGGATCAGTGCTTTCATCCTCTCCTGCTGTTGCGTATCCACCCACTACACCTTTTCCATATCCAGGATTTCCATTTGAGACCAATTTTCCATTATCTTCAAACTCCTTTTCTGGTTCAACTGCATTTATGGATTCGTCAACTGTGGGCGGGCTATGTTTTCCTACCATGCCTTCACAGCCAGTTGGGCCTGGTGCTGTTGTTTCATCCACATATCCTCGTCCTTATGTTATGAGTCTTCCAGGTGGTACAAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCGGGCCCTGGTGGTACGGATACAGAACGGAGGGATGATAGATTGCCTTCAGGATTGAGGCAAATGTCTGTCCCAAACTCACAAGCCTCGATGGAGGACCACTTGAAGATGTTTCAGATGGCAGGTGCTGCATTGAAAAGAAAAGAACCTGATGGTGGTTGGGATGGAGCTGAGAGATTCAGTTATAAGCAACATTCATGGCAGTAG 4911 0.4404 MQKTQRSLDLEREEESFPFPQPRIGSALPNLGFRGRGVRIRFRIDVSFQGRSWDRLGRWRIMHGCVGDQWKHNRHMWPVPANATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLTYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNIQNSSSFGVQGKGKKRERGDQGSDSSKKERLFKIEDGDSGPFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIAFTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNVPKESDKSVDDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVAKSSAIQPSLSKSSQSKLSSGEAMSKSSSPGSTKSMTTSAGSNSKDQNSKVFVGAATSDLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCREDAKSSTAVSMSVSKIQGCASRTRKSSNGLHGAGVAVGQKEHNSAKNSTRNSPSEKVSPTRVSHEKLADQPLTDQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTCSKASSPADRNDNQDRRAKTKTECLLTHVSNMMNETCDANEAVMGGDEGKGTPVVDERCRENEDGEKVVETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASASISHGDDGMNLLATVAAGEISRSENASPATSPERKSPSDELCSGNDLKLKHSGETAVRTLSELNGRATGDHPSNTVDSLQIKSELRQPATTQSHGFPGEGEIISSCHDTHINISPSDLSQNVEGPCLRPETKEDTSVATLPVKKESNADPGISDSKLRPSACSFDDDQKVDHMKEEITENEKMLVSKPVTNVESENESGEKQPESSSGVDNENPTSVEKATGSGILVQKASPAAENCESIYLKKESPASGNALMVPRDENANDMKSVVSESDVRRMEQDSSVPDDANECAEDNMGRKEAIGQYCAPSVQPELPTMSGKENEVFKSCEQNLDSNSSEVAGERHACSAGADTAVKLNFDLNEGFPVDDVSQGEIARQEDTITSSAVHVPCPLPFPISSISGGFHTSITVASAAKGPVVPPENPLRVKGELGWKGSAATSAFRPAEPRKNAETQSSTNDNTSVDVTCIKQSRPPLDFDLNVADERCFEDVGSHGSLESGPHDRSVGLDLDLNRVDETPEIGTFSISKLDIPSLPSKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSEVPPRSQQMKNTVPFPTAIHSTRTNNAEYGSYSAWFPPGNSYSAITVPPLLSGRGEQSYVAGAGAQRIMGPTGSTPFGPEIYRGSVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNSFSGSTAFMDSSTVGGLCFPTMPSQPVGPGAVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGGTDTERRDDRLPSGLRQMSVPNSQASMEDHLKMFQMAGAALKRKEPDGGWDGAERFSYKQHSWQ 1636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00103 1636 MobiDBLite consensus disorder prediction 937 1110 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1352 1393 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1554 1571 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1005 1043 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1256 1283 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1084 1103 - -
Spst4g00103 1636 Pfam BAH domain 103 208 IPR001025 GO:0003682
Spst4g00103 1636 MobiDBLite consensus disorder prediction 623 728 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 644 661 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1267 1283 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 673 718 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1554 1599 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 770 793 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 860 874 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 494 562 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 981 1003 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 842 874 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1 18 - -
Spst4g00103 1636 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 370 479 IPR035441 -
Spst4g00103 1636 CDD TFIIS_I 390 466 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 279 310 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1352 1370 - -
Spst4g00103 1636 SMART BAH_4 101 216 IPR001025 GO:0003682
Spst4g00103 1636 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 62 1636 - -
Spst4g00103 1636 ProSiteProfiles TFIIS N-terminal domain profile. 382 468 IPR017923 -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 842 859 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 239 313 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1614 1636 - -
Spst4g00103 1636 ProSiteProfiles BAH domain profile. 101 216 IPR001025 GO:0003682
Spst4g00103 1636 SMART TFS2_5 388 467 IPR003617 GO:0005634
Spst4g00103 1636 Gene3D - 85 306 IPR043151 -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 1 21 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 471 486 - -
Spst4g00103 1636 Pfam TFIIS helical bundle-like domain 416 465 IPR017923 -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 468 597 - -
Spst4g00103 1636 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 333 469 IPR035441 -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 572 597 - -
Spst4g00103 1636 MobiDBLite consensus disorder prediction 250 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00103 Spst-Chr4 1055025 1061453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Spst4g00103 BAH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00103 - - gmx:112998769 2587.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00103 4 1055025 1061453 Spst9g02249 9 52297089 52312790 ECH
Spst4g00103 4 1055025 1061453 Spst4g00103 4 1055025 1061453 ECH