Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00098 ATGTCGGAAGGGTTCGCAATCGAACTGTACTTGGATCCGGCGTTGGAGAACCAGGTGCTGAAGGCGTGGAACGTCCTCGCGCGGCGACAAATCACCACTCACCTCATCGAGATGGAGTCGCGCCCTCACATAACGCTCTTCTCCGCCTCCTTTCTCGATCCTTCCAAGCTCGAATCGCTCCTCAGAACCTTCGCATCCAAACACGACCCTCTCCCTCTCTCCTTCTCCTCCGTTGGCACCTTCCCCAACCACGCCGACAACCTCCTCTTCCTCGCCCCCACACCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGCGTCGAGGTCGCCGACGATTTCGCCTTCAATTCCTGGATACCGTACTGCTCCGTCGCCCACCACGTCCCCAAAAACAGAATGCCCGAGGCTTTCTCGCTCTTGCGGGAACTGAAATTGCCGGTTTCCGGTTACGCTACTGATATCGCGCTCGTGCAGTTCTCTCCGGTTCGGGAACTGTCTTCGTTTGTGCTCGGTAACAATGTCGACTCCTGA 555 0.5748 MSEGFAIELYLDPALENQVLKAWNVLARRQITTHLIEMESRPHITLFSASFLDPSKLESLLRTFASKHDPLPLSFSSVGTFPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGVEVADDFAFNSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYATDIALVQFSPVRELSSFVLGNNVDS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00098 184 Pfam 2'-5' RNA ligase superfamily 41 166 - -
Spst4g00098 184 SUPERFAMILY LigT-like 5 165 IPR009097 -
Spst4g00098 184 PANTHER - 1 182 - -
Spst4g00098 184 Gene3D Cyclic phosphodiesterase 5 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00098 Spst-Chr4 1039219 1039773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00098 1 184 Calmodulin-binding Proteins AT5G40190 62.500 6.36e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00098 - - pvu:PHAVU_004G019100g 350.517