Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00093 ATGTTAAAAAGCATGTATCCTAGGTTGTTGGTTTTTGACCATACTCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCTTCATCTTCTTCTTCACCCCCTTACCCTCCTGGTGCTGCTTTCCACAAAGAATCATCTTCAACAACACCACCTTCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTATTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTCCTTCACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTCCTTCATCTGCTCAATCCAACAGACACCCAGAAATTTCCACATCTGATGCTCTCCAGAGGCAGCTGCAGCAGCTCTTCCATCTCCATGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTCTTTCAGTACAAGGAGATTGTAGGGTTGAAAGAGCCTTTTGACTGTGCTGTTTGTCTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTACCTGTTTGCAGCCATGCTTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTTACTCATGGATTTTCTATTGAAAACCCTATATTTGATTTTGATGATCTGAGGGAGGATGAAGGGTGTCCTTGTAATGGAGAGAGTGGATTCGGTACTAGACAGAAAACGGTAGTGGTTGAAGAAAGTGTGGAGAAAGGAGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAATGGGGAGGGTGGGGAGAGTGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGACCTCAGGGTGGCCTTAAACCATGAAAGTGGTAAAGGTCAAGTCACAAGGCACACCAAAGGAATGGAACATGATGGGAAGCTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGATGTGGCCAAAGAAGGGGAAATTACCTACTTCTTTGGATGCTCAAATGGGCATGCCAATGCCATCTTTTCTAAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGGCATGA 1185 0.4397 MLKSMYPRLLVFDHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSSSPPYPPGAAFHKESSSTTPPSSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSPSSAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLLTHGFSIENPIFDFDDLREDEGCPCNGESGFGTRQKTVVVEESVEKGVFPVRLGKFKKLNGEGGESEVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHESGKGQVTRHTKGMEHDGKLSVEGDVEAKKISSVSKGDSFSVSKIWMWPKKGKLPTSLDAQMGMPMPSFLNTDFQRRRETEGA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00093 394 MobiDBLite consensus disorder prediction 43 69 - -
Spst4g00093 394 FunFam RING-H2 finger protein ATL46 126 211 - -
Spst4g00093 394 SUPERFAMILY RING/U-box 143 211 - -
Spst4g00093 394 CDD RING-H2_EL5-like 163 206 - -
Spst4g00093 394 Pfam Ring finger domain 163 206 IPR001841 -
Spst4g00093 394 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Spst4g00093 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 67 357 - -
Spst4g00093 394 SMART ring_2 164 205 IPR001841 -
Spst4g00093 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 212 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00093 Spst-Chr4 990496 991680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00093 61 364 C3H Transcription Factor Family AT2G18650 42.560 1.59e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00093 - - gmx:100806337 630.172