Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00090 ATGCAGGTCATGGCCTCTGGACTTCTTTTCACTCTGCATAATGTGTCTTCTTCTTCTTTTGTCTCAACCACTAAACGTTGCTTAGGCCTATGTTGTCTCTGGAATCGAAAGTTAAGTGGAATTGGTGCTTCTGCTGCTACTGATGTAGAGCCTAGTAAACCACCAGTGCAAATTGATCATAATCAGCTTCTGATTGATGGCCAGTTTGTTGATGCAGTTTCTGGAAAAACTTTTGCAACCATTGATCCAAGGACTGGAGATACAATTGCCAATGTGGCCGAAGCGGACGTTGAAGATGTAGATCGAGCTGTCCGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACAGCTTATGAAAGATCACGAATTATTTTGCGTTGTGCTGATATATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAATGGGAAGACTTATGAACAGGCTGCAAATGTTGAAATACCTATGGTGGTACGCTTGTTCCGATATTATGCAGGTTGGGCAGATAAAATTCATGGTTTAACAGTTCCAGCTGATGGATCACACCATGTCCAAACTTTGCATGAACCCATTGGTGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGAAGGTTGCACCTGCATTAGCTTGTGGTAATGCAGTTGTAATGAAAACTGCAGAACAAACACCACTTTCTGCCCTTTTTGTGTCAAAGCTATTTCATGAGGCAGGACTTCCTCCTGGAGTTCTGAATGTTATCAGTGGCTTTGGTCCTACTGCTGGGGCAGCTCTGTGTACTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCACTGCCACAGGTAGACGTGTACTAGAACTCTCTGCACGCAGTAACCTGAAGCCGGTAACACTGGAGCTGGGTGGGAAATCTCCATTCATTGTGTGCAGAGATGCTGAAATTGATGCAGCTGTTGAGGCTGCACATGCTGCATTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGCACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTATTAAACGTGTAGTTGGAGACCCTTTCAAAAGTGGGGTTGACCAGGGTCCTCAGATTGATTCTGCTCAATTCGAGAAGATCCTGAAATACATAAGATCAGGCATTGAAAGTGGTGCTACACTAGAATCTGGTGGTCAAAGAGTTGGCTCAAAAGGCTACTACATCCAACCAACTGTTTTCTCAAATGTTCAGGCATGA 1296 0.4367 MQVMASGLLFTLHNVSSSSFVSTTKRCLGLCCLWNRKLSGIGASAATDVEPSKPPVQIDHNQLLIDGQFVDAVSGKTFATIDPRTGDTIANVAEADVEDVDRAVRAARKAFDEGPWPKMTAYERSRIILRCADILEKHNDEVAAIETWDNGKTYEQAANVEIPMVVRLFRYYAGWADKIHGLTVPADGSHHVQTLHEPIGVAGQIVPWNFPLLIFSWKVAPALACGNAVVMKTAEQTPLSALFVSKLFHEAGLPPGVLNVISGFGPTAGAALCTHMDVDKLAFTGSTATGRRVLELSARSNLKPVTLELGGKSPFIVCRDAEIDAAVEAAHAALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARAIKRVVGDPFKSGVDQGPQIDSAQFEKILKYIRSGIESGATLESGGQRVGSKGYYIQPTVFSNVQA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00090 431 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Spst4g00090 431 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 430 IPR016163 GO:0016620
Spst4g00090 431 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 310 IPR016162 GO:0016491
Spst4g00090 431 Pfam Aldehyde dehydrogenase family 70 430 IPR015590 GO:0016491
Spst4g00090 431 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Spst4g00090 431 SUPERFAMILY ALDH-like 59 430 IPR016161 GO:0016491
Spst4g00090 431 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 50 430 - -
Spst4g00090 431 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 65 321 - -
Spst4g00090 431 FunFam Aldehyde dehydrogenase3 311 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00090 Spst-Chr4 937464 940926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00090 4 430 Aldehyde Dehydrogenase Gene Family AT3G48000 69.087 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00090 K00128 - gmx:100798892 723.005