Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00086 ATGCTTTTTCATGGCATATTTTTTGTTCCAGCAAGATTGGTTTCTGTGGAGAATACTTGTAGTCTCAGACCAAAATATTGTGAGATTTTCATTGAAGCATTAGTGTGTATAATGACAGTTATTGTTACAGTGGTGCTGATATTTGTGGGATTTGCGGTCCTGATCATACTTCATGTTTGTATTTCGGAGAGACTCTCTAGAAGAGGATCAATGGTTGAGAGGGGTGCAAATGGGGGCAGAAGCATGTCCATAGTTGACTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCGGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACTGGAGATAAGTGCAGACTGTTACCTATGTGCAAGCACAGTTTTCATGCTCAATGCGTGGACACATGGCTTCTCAAGACACCCTTATGTCCAATTTGCAGGTCTAATGCTCATTCTCATAGTGGAAACCAAGTTATAGGTAACAATGACTACTTTGTTGCAGCAAATAGTGTGTCTAGGGAGAGCCAAACTGCTACAAGAAGTCAGCAAAATGACAGTATGGTGGTATTGGTACAGTTGAGAGAAAGCCTAGAAAATGGTCCATCAACAAATGTTGTCATGGAAAATCCAACATTAGGAAGTCGTAACTTGATCAGAGAGGAGTAG 672 0.4167 MLFHGIFFVPARLVSVENTCSLRPKYCEIFIEALVCIMTVIVTVVLIFVGFAVLIILHVCISERLSRRGSMVERGANGGRSMSIVDLEKLPCYDYVAKGNTSSPVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLKTPLCPICRSNAHSHSGNQVIGNNDYFVAANSVSRESQTATRSQQNDSMVVLVQLRESLENGPSTNVVMENPTLGSRNLIREE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00086 223 SUPERFAMILY RING/U-box 101 159 - -
Spst4g00086 223 Pfam Ring finger domain 106 149 IPR001841 -
Spst4g00086 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
Spst4g00086 223 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Spst4g00086 223 SMART ring_2 107 148 IPR001841 -
Spst4g00086 223 FunFam RING-H2 finger protein ATL2K 82 155 - -
Spst4g00086 223 MobiDBLite consensus disorder prediction 203 223 - -
Spst4g00086 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 34 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00086 Spst-Chr4 926151 927070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00086 77 151 C3H Transcription Factor Family AT2G18650 48.684 7.90e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00086 - K15692 gmx:102667575 313.538