Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00084 ATGGAGTCTGGACGGCTTTTCTTTGATGCCTGTGCTTCTCGCGGGAACACCAACATGCTCTTCCTCGGCAACACTGAACTCGCTTTTCGAGGGAGATCGATGATGAGCTTGGAGGAAGCCTCGAAGAGGCGACCTTTCTTCACCTCACCAGATGAACTGTATGATGAGGAGTATTATGAGAAGCAGATGCCGGAGAAGAAGCATCGCCTCAGTTCTGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGATAGGAAGACCCAGCTGGCTAAGAAGCTGGGATTGCAACCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAACAGCTTGAAAGGGATTATGATGTTCTCAAGTCTTCATACGATACCCTACTTTCATCCTATGATTCAATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAACCATTATATGACAAGAAAGTTGATCCACTTCCAGCAGAAGATATTGCTCCAATTTTCAGCACAAGGGTGGAGGACCACCAGAGTAGTGGATCTATTGGAAGTGCAGTGGTGGATGAGGGCAGTCCACAGCTGGTCGTTGACAGTGTTGATTCGTACTTTCCAGCTGACAACTACGGTGGCTGTGTGGGCCCAGTTGAAAGGGTTCAGTCAGAGGAGGAGGATGGGAGTGACGATGGGAGGAGTTACATGGATGTTTTTGTGGTATCTGAAACTGAGAATCAAAACCATGAGGAAGGAGAGGCATTGGGTTGGTGGACCAATATGTATTATGTTGGATAA 855 0.4737 MESGRLFFDACASRGNTNMLFLGNTELAFRGRSMMSLEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVHLLEKSFEEENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEEPLYDKKVDPLPAEDIAPIFSTRVEDHQSSGSIGSAVVDEGSPQLVVDSVDSYFPADNYGGCVGPVERVQSEEEDGSDDGRSYMDVFVVSETENQNHEEGEALGWWTNMYYVG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00084 284 CDD homeodomain 66 122 IPR001356 GO:0003677
Spst4g00084 284 FunFam Homeobox-leucine zipper protein HAT5 59 123 - -
Spst4g00084 284 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Spst4g00084 284 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Spst4g00084 284 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Spst4g00084 284 SMART HOX_1 63 125 IPR001356 GO:0003677
Spst4g00084 284 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Spst4g00084 284 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Spst4g00084 284 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Spst4g00084 284 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Spst4g00084 284 Coils Coil 141 168 - -
Spst4g00084 284 Gene3D - 59 128 - -
Spst4g00084 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 214 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00084 Spst-Chr4 907267 909518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00084 1 277 Homeobox Transcription Factor Family AT3G01470 56.537 1.12e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g00084 Homeodomain 8.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00084 K09338 - gmx:100797836 526.168