Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00051 ATGGAAGAAGACTTGATCTTGATCAACTATATTGCCAATCACGGTGAAGGTGTTTGGAACTCTCTAGCCAAAGCTTCTGGTCTTAAACGAACGGGAAAAAGTTGTCGACTTCGTTGGCTAAATTACCTTCGTCCTGATGTTAGAAGAGGGAATATCACAACTGAAGAACAGCTTTTGATCTTTGAACTTCATGCAAAGTGGGGTAATAGGCAAATGCATCATTCCGAAGGGGAGATTCAGAAACTTATAACCAAACTCTTTTATACGCGAGACTCAAAATTCAACACGTTTATTCTCGACCAAGGAACATGGTCTCAAACAGACACGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATCAAGAACTTTTGGAGAACCAGGATCCAGAAGCACATGAAGCAAGCTGAGAATTCACAGCAGCATGGTACGTTTATACTAGTCAAGTTTGGTGTTACCATTCATGTGATGTGA 486 0.4095 MEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIFELHAKWGNRQMHHSEGEIQKLITKLFYTRDSKFNTFILDQGTWSQTDTWSKIAKHLPGRTDNEIKNFWRTRIQKHMKQAENSQQHGTFILVKFGVTIHVM 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00051 161 CDD SANT 110 131 IPR001005 -
Spst4g00051 161 CDD SANT 2 43 IPR001005 -
Spst4g00051 161 Pfam Myb-like DNA-binding domain 2 57 - -
Spst4g00051 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Spst4g00051 161 SUPERFAMILY Homeodomain-like 2 132 IPR009057 -
Spst4g00051 161 ProSiteProfiles Myb-like domain profile. 44 133 IPR001005 -
Spst4g00051 161 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Spst4g00051 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 137 IPR017930 -
Spst4g00051 161 Gene3D - 1 48 - -
Spst4g00051 161 Gene3D - 53 136 - -
Spst4g00051 161 SMART sant 48 135 IPR001005 -
Spst4g00051 161 SMART sant 2 45 IPR001005 -
Spst4g00051 161 FunFam Myb transcription factor 1 48 - -
Spst4g00051 161 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 145 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00051 Spst-Chr4 580093 583294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00051 1 146 MYB Transcription Factor Family AT3G01530 61.905 4.47e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00051 Myb_DNA-bind_6 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00051 K09422 - gmx:100305972 202.986