Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00046 ATGGCTGCCACGGCAACTGCCTCTTCAATGGGTCCCCGGTATGCACCACCAGATCCGACCCTCCCGAAACCATGGAAGGGTCTTGTGGATGGTAAAACCGGGTATCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAGTATGAGAGGCCCTCGAGCTCAGCTGCCCCGCCAAAGTCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATATGTCTCAAGGGTCACAACGTGGTCGTAGTCCTGATTTCAGTGACAGGTATGATAGAAATGGAAATGGTGGATCAAATGAAGCTGTATCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTATAGTTCTCATAGTTTTCCAACTGGAACGAATGCTGCTGCCAATGTTAATTCTTCTGTCAAAGGTCATGGGGCTTCGGATGCTGGAGCTGGACTATCTCCTGAGTCTTATCGAAATCGGCATGAAATAACTGTGACTGGAGACAATGTGCCGCCACCCCTTACATCATTTGGCTCTACTGGCTTTCCACCAGAGCTTCTGAGAGAGGTACAAAATGCTGGTTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGCAGAGATATAGTTGCCATTGCAAAAACAGGCTCAGGAAAAACCTTGGGGTATTTAATTCCAGCATTTGTTCACCTCAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGCACTTGTACTTTCACCAACAAGGGAGTTGGCAACACAAATACAAGATGAAGCTGTGAAATTTGGGAAATCGTCAAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCGAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTTGATGAAGCAGACCGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCTAATCGTAGGCAAACACTCATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTATTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTATTGCCACTAATGGAGAAACAAAGACGTCTGGAACATATTTTACGATCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGAAATCTGATGCGTCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAATCAATTTCGCACTGGGAGGTCCCCTGTTCTTGTGGCCACAGATGTTGCTGCCCGGGGATTGGATATCAAGGACATTAGGGTGGTTGTCAATTATGACTTCCCCACAGGGGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGCAGAGCAGGAGCCACTGGGCTAGCTTACACCTTCTTTGGTGACCAGGATGCTAAATATGCTTCAGATCTGATCAAAGTTTTGGAAGGTGCAAACCAGAAAGTACCTCCAGAACTTCGTGATATATCATCACGGGGTGGTGGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGACGAGGTGGACGTGGTGATTCTGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTGACTATGCAGGATACGGTGGAAGAGGGAGTGATTCAAATTATGGAGGGAGGGCCACTGCTTCTTCTGGCAGAGGAGGGCGTGGGTTTGACTATGACTCTCATAGGAATGATCGGGGTCCGAGTCCAGACAAGGGATCAAAATGGAGTGATCGCTTCAAAAGTGTCAACCGTGAACGTAGTCGTAGCCCTGACAGGGCTGCACTATCTCAACATTCCCAAAGCAGCTTTCACAAGTCCATGATGGATCGTGGTGGATGGGGGGATAGTGATCGCAATAAGAGCTCCAACCGGGATCGAAGTCGCAGTCCTAGCCCCTATAGACAGGAGAGGATCCCAACAGTTCGTGAACGATCCCCAGTTCACAGTTTTCATCGATCGATGACGGGACAAGGTCAATCATCCCCACGGCATCGTGCACGCAGTCCATACCGAAACTCGTCTCCATCTCAGGGTGGTGGTAGGTCCAATAATAATAGTCCTCCAAAAGAGTGGGGAGGGTCTTCGGGTGATGGAAAATTTGGGGGATCCCATTCGTCTTACAATGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGAAGGAATGATAGATCAAGATGATCACATATATCGGAGTGCGGATTAG 2376 0.4743 MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVQVQHMSQGSQRGRSPDFSDRYDRNGNGGSNEAVSRNNQSSKGGSYSSHSFPTGTNAAANVNSSVKGHGASDAGAGLSPESYRNRHEITVTGDNVPPPLTSFGSTGFPPELLREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFVHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLMRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPPELRDISSRGGGGMGRSRRWGSGGRGGRGDSGYGGRNNDSGYGGRGDYAGYGGRGSDSNYGGRATASSGRGGRGFDYDSHRNDRGPSPDKGSKWSDRFKSVNRERSRSPDRAALSQHSQSSFHKSMMDRGGWGDSDRNKSSNRDRSRSPSPYRQERIPTVRERSPVHSFHRSMTGQGQSSPRHRARSPYRNSSPSQGGGRSNNNSPPKEWGGSSGDGKFGGSHSSYNGEVEEGMIPEEEGMIDQDDHIYRSAD 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00046 791 SMART ww_5 20 53 IPR001202 GO:0005515
Spst4g00046 791 Gene3D - 377 547 IPR027417 -
Spst4g00046 791 FunFam ATP-dependent RNA helicase RhlB 376 548 - -
Spst4g00046 791 FunFam probable ATP-dependent RNA helicase DDX17 143 375 - -
Spst4g00046 791 MobiDBLite consensus disorder prediction 612 649 - -
Spst4g00046 791 MobiDBLite consensus disorder prediction 707 748 - -
Spst4g00046 791 MobiDBLite consensus disorder prediction 47 147 - -
Spst4g00046 791 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Spst4g00046 791 MobiDBLite consensus disorder prediction 538 791 - -
Spst4g00046 791 CDD SF2_C_DEAD 386 515 - -
Spst4g00046 791 MobiDBLite consensus disorder prediction 91 134 - -
Spst4g00046 791 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Spst4g00046 791 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Spst4g00046 791 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Spst4g00046 791 Gene3D - 17 65 - -
Spst4g00046 791 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Spst4g00046 791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Spst4g00046 791 MobiDBLite consensus disorder prediction 47 82 - -
Spst4g00046 791 MobiDBLite consensus disorder prediction 1 27 - -
Spst4g00046 791 Gene3D - 145 376 IPR027417 -
Spst4g00046 791 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 544 - -
Spst4g00046 791 SMART helicmild6 426 506 IPR001650 -
Spst4g00046 791 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Spst4g00046 791 MobiDBLite consensus disorder prediction 667 706 - -
Spst4g00046 791 Pfam WW domain 21 51 IPR001202 GO:0005515
Spst4g00046 791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Spst4g00046 791 CDD WW 22 50 IPR001202 GO:0005515
Spst4g00046 791 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Spst4g00046 791 SMART ultradead3 186 389 IPR014001 -
Spst4g00046 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00046 Spst-Chr4 514660 519092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00046 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 33.506 6.56e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00046 K12823 - gmx:100816455 1210.28