Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00044 ATGGATGAGTCACAGAGCTCCACTGGGAATCCATCATCCATCATGTTCCTCCCCACCAACACTTTTCACCTTTTTCAATGCCACACCATGAACATTGCTTGCAACCCTACCTCCATGAAGGAGGGTCATTCCAACCCCATCACCATCCCCTTCTATGGGATATTGACCCCTTCTTTGGATATACAATCAACCAGAAAAATGATGGATGCTTTACATGCCTGCCAAAGAACCAAAGTCATGTGTGGTTTTTCACAAACAACCATGCTTCCTCCTGCTCCTCCTCCTCCTCCATCTCAACCTTCCTCTTCCAAATCATCATTACCCTTTTCTCTCTTCAATAAATGTGAATTGGTGATGAGTGAATGTCACTTAGACACTAATAAAAAAGTAAATGTGGAAAAAGATACCAACTTTGATAATAATGTCATAATCAAAAGGCCATGGACTCCTGAGGAAGATAGTGCTCTTGTGGAATTGGTGAATCGATTTGGGGCAAAGAAATGGTCGCAAGTTGCAACATTAATACGTGGCAGAACTGGGAAGCAATGTCGAGAAAGATGGAAGAACCATCTTCAGCCAAACATTAGGAAGGAGTCATGGAGCCTGGAAGAAGACATGATTTTGATCAAAGCCCACCAAGAATTTGGAACTAAATGGTCAAAGATTGCGAAGAGATTGTGTGGTAGGACTGAGAATGCTATCAAGAACCATTGGAATGCCACCAAGAGACGCCAAAACTGCATGGGTCTCAGCAAGAACAACCATGCTCCATGCAAAGGGTCAATACTCCATGCCTATGTTAAATGGGTCACTGCAACTGAACAATCTGCAAAAGTTCTCAAAAAATCCTCAGACAAAAAGAAGTCAAAGGTGTTGAAATACAATTGTGATGAGCTAGCTCTTTTCTCGAGCTAA 915 0.423 MDESQSSTGNPSSIMFLPTNTFHLFQCHTMNIACNPTSMKEGHSNPITIPFYGILTPSLDIQSTRKMMDALHACQRTKVMCGFSQTTMLPPAPPPPPSQPSSSKSSLPFSLFNKCELVMSECHLDTNKKVNVEKDTNFDNNVIIKRPWTPEEDSALVELVNRFGAKKWSQVATLIRGRTGKQCRERWKNHLQPNIRKESWSLEEDMILIKAHQEFGTKWSKIAKRLCGRTENAIKNHWNATKRRQNCMGLSKNNHAPCKGSILHAYVKWVTATEQSAKVLKKSSDKKKSKVLKYNCDELALFSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00044 304 FunFam Transcriptional activator Myb isoform A 144 197 - -
Spst4g00044 304 CDD SANT 147 191 IPR001005 -
Spst4g00044 304 ProSiteProfiles Myb-like domain profile. 145 191 IPR001005 -
Spst4g00044 304 CDD SANT 199 242 IPR001005 -
Spst4g00044 304 Gene3D - 199 241 - -
Spst4g00044 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 195 IPR017930 -
Spst4g00044 304 SUPERFAMILY Homeodomain-like 144 238 IPR009057 -
Spst4g00044 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 246 IPR017930 -
Spst4g00044 304 SMART sant 196 244 IPR001005 -
Spst4g00044 304 SMART sant 144 193 IPR001005 -
Spst4g00044 304 PANTHER MYB PROTEIN-RELATED 120 281 - -
Spst4g00044 304 MobiDBLite consensus disorder prediction 85 105 - -
Spst4g00044 304 Gene3D - 144 196 - -
Spst4g00044 304 Pfam Myb-like DNA-binding domain 148 205 - -
Spst4g00044 304 ProSiteProfiles Myb-like domain profile. 192 242 IPR001005 -
Spst4g00044 304 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00044 Spst-Chr4 498957 501027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00044 142 288 MYB Transcription Factor Family AT4G18770 48.684 9.21e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g00044 Myb_DNA-bind_6 3.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00044 K09422 - vra:111242362 285.804