Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00040 ATGGCTTCCCATTATCACAGTAACCACTACAAGTGCAAGAATGCATCATTCGATGATGTTATCTTCACGGTGGCCACCCTCTTGTGTTTCTTCCACTCAGCACTATCTGATCCAAGAATCTCAACAGTGGGGTACTACTGTGGCACTCACAAGGCACCAACAAGTGGTAACTACTTCCCCATGTTCACCAAAGAAATGGAAAAGCTTCAAGAGCTTGTGAGCAAAAACAACTGGGGCACTCACTCTGAGGGCGTATCATCAGCCACTCCCCTTTATGGTTTGGCACAGTGCTTCCAAGACCTTTCCAACATTGATTGCCTTCAGTGCTTTGCAGCCAGCCGCACCAAGCTCCCTCGCTGCCTCCCTTCAGTTTCTGCTCACATTTTCCTTGATGGCTGCTTTCTTCGTTATGACAACTATAGTTTCTACACCGAGGACACTGAACCTGTGAGGGACACAGTCAACTGCACCACACAGTATGGTCCTGTGGCTGGTGAGGCTGAGAGGTTGGTGTTTGGTGATAGTGTTGGCAAAGTGGTTGAGAGTGTGGTGAGGGTGGCAGTGAATGAGGGAAGAGGGTTTGCAGTGGGAGAAGGTGAGGGAGTTTATGCCTTGGCACAGTGCTGGAAAACTGTTCGGGGAAAAGGGTGTAGTGATTGCTTGAGGAAAGCTGGAAATGAGGTCAGAAGGTGTTTGCCTAAGAGGGAAGGGAGGGCCTTGAATTCTGGCTGTTATTTGAGATATTCAACTTTTAAGTTCTACAATCAAGGAGGTGAAGATGGGGAAGGAGATGATTCTTCTAGAAAACGAACCATCAAAGCAGCAGTGTCAGTCTCGGCTGCAGCTGTTGCAGCTCTCTCTCTCTTGGCCTCTTATGTGGCCTTCACCAAAATGAGAAAAAAAAACAATCTCATTGAGATTCCCTCTTACTTGAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTATTTCTGCTCTTCAAGAAAAATAGGCCAAGGAGGAACAGGTTCTGTATTCAAAGGGACTCTCCCAAATGGGAAAGATGTTGCTGTTAAGAGATTGGTCTTCAATAGCAGGCAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGTGGAATGAATCACAAGAACCTTGTCAAGCTATTGGGTTGCAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACCTACCCAACAAGAGCTTAGACCATTTCCTTTTTGAAAAGGAAAAAACAAGGATTCTAAAATGGAAGCAACGGTTTGAAATAATTCTTGGAGTTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCAGTAATAAGAATCATCCATAGAGACATCAAAAGTAGCAATGTTCTTCTTGATGAGAATCTCAACCCCAAGATTGCAGATTTTGGTCTTGCCCGGTGTTTTGGTGCTGACAAAACACATCTAAGCACAGGAATTGCAGGAACACTAGGTTACATGGCTCCTGAGTATCTCATTCAAGGACAACTTACAGACAAAGCAGATGTGTATAGTTATGGAGTCCTTGTTCTGGAGATTGCAAGTGGCAGGAAGAATAATATCTTCCGTGAGGATTCTGGTTCCCTTTTGCAAACAGTTTGGAAACTTTACCAATCAAACAGATTGGGTGAAGCTGTTGATCCATGTTTGGGAGATGACTTTCCTGCAAGAGAAGCATTCAGGGTGTTTCAAATTGGATTACTATGCACACAAGCTTCTGCTTCTCTTAGGCCTTCCATGGCTCAAGTTGCATGCATGTTAAGCAATTCAAATTTGGATGTCCCTATTCCAAAACAACCCCCATTTTTGAACTCTAGATTGCTAAATCAAACAGCTCCATTAGGTTTCAGCATAGATAGCTCCTCATCAAACACATTCAAAATGATTGATGTGTCCCACAATCCCTCTGAGTCCTCAAGTACATGCAGCTTGATTAGGCCATCAAGAAGTGAAGAAACAATTTTGGAAGTTTGA 2007 0.438 MASHYHSNHYKCKNASFDDVIFTVATLLCFFHSALSDPRISTVGYYCGTHKAPTSGNYFPMFTKEMEKLQELVSKNNWGTHSEGVSSATPLYGLAQCFQDLSNIDCLQCFAASRTKLPRCLPSVSAHIFLDGCFLRYDNYSFYTEDTEPVRDTVNCTTQYGPVAGEAERLVFGDSVGKVVESVVRVAVNEGRGFAVGEGEGVYALAQCWKTVRGKGCSDCLRKAGNEVRRCLPKREGRALNSGCYLRYSTFKFYNQGGEDGEGDDSSRKRTIKAAVSVSAAAVAALSLLASYVAFTKMRKKNNLIEIPSYLKNSSLNYKYETLEKATDYFCSSRKIGQGGTGSVFKGTLPNGKDVAVKRLVFNSRQWVDDFFNEVNLISGMNHKNLVKLLGCSIEGPESLLVYEYLPNKSLDHFLFEKEKTRILKWKQRFEIILGVAEGLAYLHGGSVIRIIHRDIKSSNVLLDENLNPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSYGVLVLEIASGRKNNIFREDSGSLLQTVWKLYQSNRLGEAVDPCLGDDFPAREAFRVFQIGLLCTQASASLRPSMAQVACMLSNSNLDVPIPKQPPFLNSRLLNQTAPLGFSIDSSSSNTFKMIDVSHNPSESSSTCSLIRPSRSEETILEV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00040 668 Gene3D Phosphorylase Kinase; domain 1 290 405 - -
Spst4g00040 668 ProSiteProfiles Gnk2-homologous domain profile. 151 253 IPR002902 -
Spst4g00040 668 SUPERFAMILY Protein kinase-like (PK-like) 316 618 IPR011009 -
Spst4g00040 668 Gene3D Transferase(Phosphotransferase) domain 1 406 605 - -
Spst4g00040 668 ProSiteProfiles Gnk2-homologous domain profile. 40 142 IPR002902 -
Spst4g00040 668 ProSiteProfiles Protein kinase domain profile. 330 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00040 668 MobiDBLite consensus disorder prediction 643 668 - -
Spst4g00040 668 FunFam Cysteine-rich receptor-like protein kinase 2 406 606 - -
Spst4g00040 668 Pfam Protein kinase domain 333 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00040 668 MobiDBLite consensus disorder prediction 643 659 - -
Spst4g00040 668 FunFam Cysteine-rich receptor-like protein kinase 2 296 405 - -
Spst4g00040 668 FunFam Cysteine-rich receptor-like protein kinase 3 155 253 - -
Spst4g00040 668 Gene3D - 167 253 IPR038408 -
Spst4g00040 668 Gene3D - 40 142 IPR038408 -
Spst4g00040 668 SMART serkin_6 330 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g00040 668 CDD STKc_IRAK 336 598 - -
Spst4g00040 668 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Spst4g00040 668 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 92 620 - -
Spst4g00040 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Spst4g00040 668 Pfam Salt stress response/antifungal 57 140 IPR002902 -
Spst4g00040 668 Pfam Salt stress response/antifungal 172 250 IPR002902 -
Spst4g00040 668 FunFam Cysteine-rich receptor-like protein kinase 2 40 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00040 Spst-Chr4 410709 414523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00040 20 495 Receptor kinase-like Gene Family AT5G40380 54.115 1.57e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst4g00040 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00040 - - gmx:100819689 1107.05