Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00022 ATGGCTCAAATTTTGACCCAACCTGCGTCTTCTTCTTTCAAACTCTCCAACTCAACCCTGAGAGTAAACGAACAAGTCATAATGTCCCAAGTGCCCGACAACATCACCATCATTCCATGCACCTACTCGCCCACCACCGGTTCCTTCATCGTTGTCAAGACCACCTCACCAAATTCCCACCATGTGGCGACCTTAGGCAAGCTCCAACCCGCAACCTTCGTCTCCATCTACCGCTTCCAGAAGTGGCGGAACGCGGTCTGGACCGGCTCAAACGGCAGCCACGTCCAAACCGAAACCCATTTTCTCCTGCTCCAATCCAACCCGAGCCGACTTTACGTTCTTTTTCTCCCCATCGTCACGCTGCAGCCCGGCCCAGACGACAAAGTCTCGGTTTGCTTGGAGAGCGAATCTAGCCACGTGACGACTTCCTCGTGCGAGAGCGTGGTTTACCTTCACGCCGGGGAGAACCCTTACACTGTGGTGGAGGAAGCCGCGCGCGTGCTGAGAGATCACCTGGGAACCTTCAAGCTCCTCGAAGAGAAAACTGATAAACATAGAATATACGATTACAAATACCACGTCCGCAAAGGGGTGGCGGGGTTGGTTGAAGGAGGGTGTCCTCCGGGGTTTGTTTTGTTGGAGAATGGGGTGCAGTGTATGAGGCCCATTGAAGTGTTAGTGAGGGCGTTGAAGGAGGAGTTTTCAACGGTGGAGTGTGTGTTCGCCTGGCACGCGCTTAGCGAGTATTGGAAAAGGGATGGTGGAATGTCTGAGATTGAGAAGCTTCACTCTCAGTTAGAGGCTCACGGAATCGATGGGGTTAAGGTTCATCTCCTCCCTGTAAGTTCTCTCCTACTTTTAGTGTACCGAGTTCATCTCCAACATGTGTGTTCTGGTTGTGAAGTGAAGATCATGGCATCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGGAGGAAGTGCATGCCAGATTGCATTTTCGCCCCATATTTCCCTCCAGAGGAGCCTCAGAAGTTTGCCAATGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGCTCCTGAACGAGGTGCAACCCTATCAGAGAGAGGATGCTGTGAACTCTCTGGCCTATGAAGCCGAAGCAAGGATCAAAGATCCAGTGTATGGTTGTGTTGGTGCCATTTCAGTGCTCCAAAGACAAGTCCTCAGGCTCCAAAAGGAACTTGATGCTACAAACGCTGATCTGATCCGCTATAGCACTTGCAATGAAATGCCAAATAGCAGCACCAGTCATCATGGAGGGAGAAGCAAGATGAGTAGTGATGATGATGGTGGTGGTGGTTCCTCACATGGTTTAAGTTTCTATTATGCTTCTGCTAATTGGAACAATGATCCTTACCCCAGAGGAGATATATAA 1413 0.5025 MAQILTQPASSSFKLSNSTLRVNEQVIMSQVPDNITIIPCTYSPTTGSFIVVKTTSPNSHHVATLGKLQPATFVSIYRFQKWRNAVWTGSNGSHVQTETHFLLLQSNPSRLYVLFLPIVTLQPGPDDKVSVCLESESSHVTTSSCESVVYLHAGENPYTVVEEAARVLRDHLGTFKLLEEKTDKHRIYDYKYHVRKGVAGLVEGGCPPGFVLLENGVQCMRPIEVLVRALKEEFSTVECVFAWHALSEYWKRDGGMSEIEKLHSQLEAHGIDGVKVHLLPVSSLLLLVYRVHLQHVCSGCEVKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRYSTCNEMPNSSTSHHGGRSKMSSDDDGGGGSSHGLSFYYASANWNNDPYPRGDI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00022 470 MobiDBLite consensus disorder prediction 420 446 - -
Spst4g00022 470 Pfam Lateral organ boundaries (LOB) domain 314 410 IPR004883 -
Spst4g00022 470 ProSiteProfiles LOB domain profile. 313 414 IPR004883 -
Spst4g00022 470 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 312 428 - -
Spst4g00022 470 Pfam Raffinose synthase or seed imbibition protein Sip1 13 220 IPR008811 -
Spst4g00022 470 Coils Coil 393 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00022 Spst-Chr4 286890 291890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00022 302 434 AS2 family AT3G27650 75.940 2.49e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst4g00022 Raffinose_syn 6.4e-43 CL0058