Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00010 ATGGAATCACCCGGAAACGAGCATGTGGTGGGTGCCGCTGACCCCAACGACGTCGTTACACCCTTCTCCCACAGAGAAGAACCTCACAATTCCCAACCGCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGAGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATCAAGCACTTTGGGAAATATGGTGAGATCACGGACTCAGTCATCATGAAGGACAGGAAAACTGGGCAACCTCGCGGATTCGGGTTTATAACGTACGCGGATCCCTCAGTGGTTGATAAAGTCATTGAGGATCCTCATGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACTCGCTATGGTGAAGTGAAAGATCACCAAATAATGCGGGACCACTCCACCAACCGATCTCGTGGCTTTGGGTTTATCACATTTGACTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCAGCACCTCCATCATCGAAGCGCTACAACGACTCAAGGTCTTCATACAGCAGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGCAGTTTTGGAGTTGGGGGTGGTTATAGGTCAGCTGGTGCTTATGGTAGCGGTAGGGGTGGTGCATATGGTGCCTATGGAAGTGAATTTGGAGGTTATGGAGGATATGCTGGTGCAATGGGGCCGTACAGAGGAGATCCTTCGCTTGGGTATGCTGGTCGTTATGGTGGAAGCTTCAGCAGAGGGTATGATCTAGGTGGGTATGGCGGACCTAGTGAGAATTATGGGGCATATGGTGGGGGTGGTGGTTCTTCTGGTGGTGGCGGTGGTGGTGCCTATCAAAGTGGCTATGATGGCAACCTAGGAGGTGGATATGGAGGAGCTAGTGGAGGTCCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 1119 0.4853 MESPGNEHVVGAADPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSGGYGDAYDGFGGSFGVGGGYRSAGAYGSGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSENYGAYGGGGGSSGGGGGGAYQSGYDGNLGGGYGGASGGPFYGSSRGGYGAGRYHPYGR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00010 372 MobiDBLite consensus disorder prediction 1 39 - -
Spst4g00010 372 MobiDBLite consensus disorder prediction 205 226 - -
Spst4g00010 372 SUPERFAMILY RNA-binding domain, RBD 127 234 IPR035979 GO:0003676
Spst4g00010 372 Gene3D - 123 236 IPR012677 -
Spst4g00010 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Spst4g00010 372 SMART rrm1_1 131 204 IPR000504 GO:0003723
Spst4g00010 372 SMART rrm1_1 43 114 IPR000504 GO:0003723
Spst4g00010 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 31 372 - -
Spst4g00010 372 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Spst4g00010 372 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 250 - -
Spst4g00010 372 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 122 - -
Spst4g00010 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Spst4g00010 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Spst4g00010 372 Gene3D - 42 121 IPR012677 -
Spst4g00010 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00010 Spst-Chr4 77968 82308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00010 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 1.07e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00010 K12741 - gmx:100793209 508.064