LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g00009	ATGGAGTCACTTGTTAATGGAGTTGATTCCTTGTCAGAGGTTCAGAATTCAGTTTCGGGGGTACATCATGATCCTCTTTCATCTGGGACTCCCCTACCTACGCAGCCTCCCTTGAGAGCATCTACAAACCATGAGGGTGGTCATCAAACCAAGACCATCCATCATCAAAGCATCCATGTAATTAATCAAAAACACTCCTATCTAGAGGGCAATAACTTGAAGCAAGAAAAGTTGCCAACAAAATTGTCCAGCAAGCTGGCACCAATTGGTGATTCCAAGGATTGTGAGTCAAATGGTGTGTTGGAATCTGACACGAAACGAGCCTTTGCTAATCATGCAAAGAACCATTGTCAGCCAGATGCTACTTTCTGCCCAAGTCCTCAGAATAGTTTCTATTCAACCACTGTCTACTCAGAAGCCAAAGAAAGTTTCACCAACACCGAAGTCAGTGAGTGTGCTAGTGCTGACAAGTCATGTGAAAGTGAAGAAGTGGCGAATTCCAGTGATTTTAATGAGAGCAGGAAGACAAGCATATGTAGTGATGTTAGTGATGAGAGTAGCACCAGTAGTTTGAGCAGTGTTTTGTATAAACCTCACAAGGCAAATGACGTTAGATGGGAAGTAATTCAAGCTATACGAACCAGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGAAATTGGGGTGTGGAGACATAGGGAGTGTGTATCTAGCTGAACTGAGTGGCACAAGAACTTCCTTTGCCATGAAGGTCATGAACAAGACCGAGCTGGCGAACCGCAAGAAGCTCGTGAGGGCTCAGACAGAGAGAGAGATATTGCAGTCCTTAGATCATCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAAACATTCTCCTGTTTGGTAATGGAGTTCTGCCCTGGTGGGGACCTGCATGCACTCAGGCAAAAACAACCAGGGAAGTATTTTTCGGAGCATGCTGTCAGGTTTTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATATACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGCACTGTTAGTCCAACTCTAGTAAAGTCATCAAACAACTTGGAGACAAAAAGTTCAGGATACTGCGTTCAGCCTTCCTGCATTAAGCCAACATGTGTGATGCAGCCAGATTGCATCCAACCATCATGCTTCAAGCCACGCTTTTTATCTGGCAAATCCAGGAAAGACAAAAAGTCTAAACCAAAGAATGATATGCATAACCAGGTGACCCCTCTTCCCGAGCTAATTGCCGAGCCAACAAATGCAAGATCAATGTCCTTTGTTGGAACACACGAGTACTTGGCGCCGGAGATCATAAAGGGTGAAGGGCATGGAAGTGCTGTGGACTGGTGGACATTTGGGATATTCTTGTATGAGCTTTTGTTTGGTAGAACACCATTCAAAGGTTCAGCAAATCGCGCAACTCTGTTTAATGTAATTGGTCAGCCTCTAAGGTTTCCAGATTCTCCAACTGTTAGCTTTGCTGCCAGGGACTTGATCAGAGGGTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGCGGCGCAACAGAGATAAAACAACATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGGCAGGTTATGAATCTTCCTCAAATGGAAAAGGACCTTGGTGTGAAGTCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA	1815	0.4413	MESLVNGVDSLSEVQNSVSGVHHDPLSSGTPLPTQPPLRASTNHEGGHQTKTIHHQSIHVINQKHSYLEGNNLKQEKLPTKLSSKLAPIGDSKDCESNGVLESDTKRAFANHAKNHCQPDATFCPSPQNSFYSTTVYSEAKESFTNTEVSECASADKSCESEEVANSSDFNESRKTSICSDVSDESSTSSLSSVLYKPHKANDVRWEVIQAIRTRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLVRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQKQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNNLETKSSGYCVQPSCIKPTCVMQPDCIQPSCFKPRFLSGKSRKDKKSKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVIGQPLRFPDSPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMNLPQMEKDLGVKSSGNYLDIDFF	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g00009	604	FunFam	serine/threonine-protein kinase D6PK-like	308	375	-	-
	Spst4g00009	604	SMART	serkin_6	224	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g00009	604	Pfam	Protein kinase domain	225	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g00009	604	Pfam	Protein kinase domain	457	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g00009	604	PANTHER	FLIPPASE KINASE 1-RELATED	84	582	-	-
	Spst4g00009	604	CDD	STKc_phototropin_like	222	578	-	-
	Spst4g00009	604	FunFam	Serine/threonine-protein kinase D6PK-like	222	307	-	-
	Spst4g00009	604	ProSiteProfiles	Protein kinase domain profile.	224	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst4g00009	604	Gene3D	Phosphorylase Kinase; domain 1	222	307	-	-
	Spst4g00009	604	Gene3D	Transferase(Phosphotransferase) domain 1	454	578	-	-
	Spst4g00009	604	SUPERFAMILY	Protein kinase-like (PK-like)	198	582	IPR011009	-
	Spst4g00009	604	MobiDBLite	consensus disorder prediction	423	448	-	-
	Spst4g00009	604	Gene3D	Transferase(Phosphotransferase) domain 1	308	377	-	-
	Spst4g00009	604	MobiDBLite	consensus disorder prediction	33	51	-	-
	Spst4g00009	604	FunFam	serine/threonine-protein kinase D6PK-like	455	578	-	-
	Spst4g00009	604	MobiDBLite	consensus disorder prediction	18	51	-	-
	Spst4g00009	604	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	345	357	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst4g00009	Spst-Chr4	67257	70473	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst4g00009	134	604	AGC Kinase Gene Family	AT5G47750	69.495	0.0	690

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Spst4g00009		Pkinase	6.5e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g00009	K08286		-	gmx:100810909	1039.64