Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00007 ATGGAAAAAGAGGTCGTGGAAAGCCTTTGGAATGGTGATGGAGAATCTCAAATTCAAGCAGCTTTAGAACTTTGTAGATTAGGAAGTAAGCAGAGGCACAAGTTGGAAGAAAGTGGAGTCATGGTTCCTCTTGTTTCCATGCTTCATTCTGAAAACTACGAAGCAACAGAAGCTGCTCTGTGTGCTTTGCTCAGCATTTGCTTTGGCTGTGAGAGAAACAAGATTCGGATCATCAAATCTGGAGCTTTGCCAGTTCTGCTAAGTCTCCTCCATTCCCAAAGCCAAAGAGTGACACACTTGACTTTGGCAGCTATGCTAACCCTCTCTTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCTGCTGGGGCTGTTCAACTCTTGGTTGAGTTTGTCAACAGCAATTGTAGCACTCAATCTCAGCTTGATGCTATAGCTACTCTACACAACCTCACAACCTGTCAAGAGATTATTCCACTGATTGTCTCTTCTGGGGTTATGCTCTCCTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGATTGCTAGAAAACCTTGTGTCTTCATCAGAGAGTGCACTGTGTGAGGCTGCTAGTACTATGGGAGCAATCAGGATACTTGTTGAGACTATTGAAGATGGATCTTCACTGAGCAAAGAGCATGCAGTGTGCATACTTCTCCTTGTATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTAGATGGAACATGGAGAGCCAAATCCGTGGCTCGAGAATTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGATCAAGATGTAAGCAGATTAATCATGAGCTTTTAGAGAGGATTATGGAAGAAATTGAAGCAGAAGGAGAGAAATTGGCAGATACTACTTTAAGGCTGGTCGAGGAGATGATTGCAAAGGCAAAGCTTAATGCTTAA 993 0.432 MEKEVVESLWNGDGESQIQAALELCRLGSKQRHKLEESGVMVPLVSMLHSENYEATEAALCALLSICFGCERNKIRIIKSGALPVLLSLLHSQSQRVTHLTLAAMLTLSSCKANKVAIASAGAVQLLVEFVNSNCSTQSQLDAIATLHNLTTCQEIIPLIVSSGVMLSLLELIHTSVKSSPLVEKAIGLLENLVSSSESALCEAASTMGAIRILVETIEDGSSLSKEHAVCILLLVCQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSVARELLLLLRDCSNYRSRCKQINHELLERIMEEIEAEGEKLADTTLRLVEEMIAKAKLNA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00007 330 Coils Coil 294 314 - -
Spst4g00007 330 SMART arm_5 28 68 IPR000225 GO:0005515
Spst4g00007 330 SMART arm_5 70 110 IPR000225 GO:0005515
Spst4g00007 330 SMART arm_5 153 195 IPR000225 GO:0005515
Spst4g00007 330 SMART arm_5 111 152 IPR000225 GO:0005515
Spst4g00007 330 FunFam U-box domain-containing protein 4 3 197 - -
Spst4g00007 330 Pfam Armadillo/beta-catenin-like repeat 71 105 IPR000225 GO:0005515
Spst4g00007 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Spst4g00007 330 FunFam U-box domain-containing protein 4 201 317 - -
Spst4g00007 330 Gene3D - 203 302 IPR011989 -
Spst4g00007 330 Gene3D - 117 202 IPR011989 -
Spst4g00007 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 165 IPR000225 GO:0005515
Spst4g00007 330 SUPERFAMILY ARM repeat 4 310 IPR016024 -
Spst4g00007 330 PANTHER U BOX DOMAIN-CONTAINING 4 282 - -
Spst4g00007 330 Gene3D - 3 116 IPR011989 -
Spst4g00007 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 199 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00007 Spst-Chr4 59426 60926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00007 4 286 U-box Gene Family AT3G54790 32.056 1.80e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00007 - - gmx:100778534 526.939