Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00003 ATGCACAAACACTTTTTAATTTCGGATATGGCAATGTTTGTTCTCTATGCAGCCATATCAGCAACATTTCTCTGCTCCCTATACTTCTTCAGAAGCAGAAGATGTTGCATACACCCGATATTGAGGGATTATCCCATCCTTGGCATGTTACCACCAGTGATCTTCAACCTGTGGAGGATCCATGATTTTATCACTGAGATTCTGAAACTACGTGGTGGCACTGGGGAGTTCAAAGGGCCATGGTTCGCCAATATGAACTATTTGGTCACTTGTGACTCCCTTAACGTGCAACACATGTTGTGCAAGCGTTTCGACAACTACATCAAGGGACCAGAGTTTCGTGAGATTTTCGAACCCTTTGGAGATGGGGTTGTCACTGCTGATTCAGAAACGTGGAAGTACTTCAGAACCATTCTCCATTCTTTGATCAAACAAAAAAGGTTTGAATCGCTTGTCGACCAAACCGTTCAGAAGAAGGTGCATACAAGTTTGCTTCCGATTTTGGATCATGCGCAACAACAAAGAAGAGTAGTGGATCTTCAGGATATCTTCAATCGATTCACATTCGATAACATATGCTCCACAATTGTAGGACATGACCCTAAGTGTCTTTCCATTGACTTTCCAGAAGTTGCAATCGAAAAGGCTTTTAATGAATCTGAAGAGTCCATATTCTACAGACACGTAGTGCCAAAAACTGTTTGGAAGTTCCAAAAATGGCTCCAAATTGGTCAAGAGAAGAAGATGACAAAAGCATGCAGAACGTTTGATGAGTACATATATTCATGCATAGCGTCCAAGCGAGAAGAGTTAAGCAAGTGCACCAGAGAAGAAATGGATGAAGCTCCATTTGACTTGCTAACTGCTTTGATCATAGAAGAGAGAGGACGCGTGCACGATGATAAGTTTCTAAGAGATGCTGCGTTTAATTTCTTTGTAGCAGGGAGAGAAACCATGACTTCAGCTCTTACCTGGTTCTTTTGGCTTATTGCTCAACACCCTCTAGTGGAAGCCAAGATTCTTGCAGAGATCAAAGATACTTTGAAGGTAAATGAAAAGAAAAATTATTACATGGCCCATGATGTTGACCGAAACGACCATCATTGTCTTGATGAGGATCATGATCTCAACCATTCTCTAACCGAGAGTGTTTTGAGCATGGAGGAAGTGAAAAAGCTAGTTTATCTGCATGGTGCTTTGTGTGAAGTTCTGAGACTTTTTCCTCCTGTACCTATTGAACGCAAGCAAGCAATTGAAGCTGACACGCTTCCAAGTGGCCATAGAGTTAACGCCAATACAATGATAATGTTTTCCTTGTATGCAATGGGGAGGAGTGAAGAGATATGGGGAAAAGATTACTTGGAGTTCAAGCCTGAGAGATGGATATCCGAGAGAGGAGAAATTGCCTATGCACCAGCTTACAAATTCATTGCTTTTAATGCAGGACCAAGAATCTGTTTGGGAAAAGACTTGGCCTTTGTTCAAATGAAGATGGTGGTTGCTTCTATTTTGTGCAAGTACCGTTTCCAAGTTGTGGAAGATCATGTTGCCACTCCAGGCCATTCGATCATCCTTCTCATGAAGAATGGTTTGAAGGCTAAGATACTGAAAAGACAAGTTTGA 1623 0.4165 MHKHFLISDMAMFVLYAAISATFLCSLYFFRSRRCCIHPILRDYPILGMLPPVIFNLWRIHDFITEILKLRGGTGEFKGPWFANMNYLVTCDSLNVQHMLCKRFDNYIKGPEFREIFEPFGDGVVTADSETWKYFRTILHSLIKQKRFESLVDQTVQKKVHTSLLPILDHAQQQRRVVDLQDIFNRFTFDNICSTIVGHDPKCLSIDFPEVAIEKAFNESEESIFYRHVVPKTVWKFQKWLQIGQEKKMTKACRTFDEYIYSCIASKREELSKCTREEMDEAPFDLLTALIIEERGRVHDDKFLRDAAFNFFVAGRETMTSALTWFFWLIAQHPLVEAKILAEIKDTLKVNEKKNYYMAHDVDRNDHHCLDEDHDLNHSLTESVLSMEEVKKLVYLHGALCEVLRLFPPVPIERKQAIEADTLPSGHRVNANTMIMFSLYAMGRSEEIWGKDYLEFKPERWISERGEIAYAPAYKFIAFNAGPRICLGKDLAFVQMKMVVASILCKYRFQVVEDHVATPGHSIILLMKNGLKAKILKRQV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00003 540 Gene3D Cytochrome P450 31 540 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PANTHER CYTOCHROME P450 30 531 - -
Spst4g00003 540 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506|GO:0016705
Spst4g00003 540 CDD CYP86A 76 531 - -
Spst4g00003 540 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS P450 superfamily signature 477 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS P450 superfamily signature 398 409 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS P450 superfamily signature 486 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 Pfam Cytochrome P450 53 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 SUPERFAMILY Cytochrome P450 28 538 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS E-class P450 group I signature 397 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS E-class P450 group I signature 476 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst4g00003 540 PRINTS E-class P450 group I signature 486 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00003 Spst-Chr4 29518 31140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00003 12 538 Cytochrome P450 AT4G39490 42.937 8.06e-155 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00003 - - gmx:100780625 875.93