Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05179 ATGGGAATTGAAAGAGGAGGTTTAAAGGGGTTCAGGAGCGGCTGGAGCGTGCCGCCGAAGCCATGTGACTCCTGCAAGCTGGCTTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCGTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGTGCCAACAAGCTGGCTTCGCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCCCCCGCCGCTGTCACGTGCAAAGCCGATGCCGCCGCCCTCTGCGTCACGTGTGACTCCGACATCCACTCCGCCAACCCCCTCGCGCGTCGCCACGACCGCGTTCCCGTCGAACCCTTCTTCGACTCTGCCGACTCCATCGTCAAGGCGTCTGCCGCCGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCTCCGCCTCCGACGCCTTCGCCACCGACGACCCCGATGCCGCCGCCTGGCTCATCCCTAACCCCAATTTCGGGTCCAAACTCATAGACGCCCCTGACATCAAGTCCAAGGAGATCTTCTACTCCGAAATGGACCCCTTCCTTGATTTCGATTACTCTAACTCCTTCCACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAACCAAACCATCCCTCGCTCCTCCCCTCATCAATAACCACCACCAATCGGAGAGCTGCTTCGACATCGATTTTTGCCGCTCCAAGCTCTCTTCCTTTAACTACCCATCCCAGTCTATTAGCCAAAGCGTTTCATCATCGTCGCTTGATGTTGGAGTGGTGCCGGATGGGAACACGGTGTCGGACATGTCCTACTCGTTTGGTCGGAACAGTTCGGAATCAAGTGGGATTGGTTTGTCCGGAGTAAGTGGAGGGCAAGGGGCGACGCAGTTGTGTGCGATGGACCGTGAAGCGAGGGTGCTGCGATACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGGCCCAGGATCAAAGGCCGGTTCGCGAAGCGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGTCGCTGATACTGGACAGTCCATACGGCGTCAACTTTAAAGGAGCTGCTGCTTTGTATTCACCTCGTGTAGAATTAGAATCTGTACTGTAA 1161 0.5754 MGIERGGLKGFRSGWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHDRVPVEPFFDSADSIVKASAAASFGFIVPSDDASASDAFATDDPDAAAWLIPNPNFGSKLIDAPDIKSKEIFYSEMDPFLDFDYSNSFHNNSAGNDSVVPVQTKPSLAPPLINNHHQSESCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSESSGIGLSGVSGGQGATQLCAMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAASLILDSPYGVNFKGAAALYSPRVELESVL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05179 386 CDD Bbox1_BBX-like 65 107 - -
Spst3g05179 386 CDD Bbox1_BBX-like 21 64 - -
Spst3g05179 386 Pfam CCT motif 299 341 IPR010402 GO:0005515
Spst3g05179 386 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 357 IPR045281 GO:0009909
Spst3g05179 386 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Spst3g05179 386 SMART bboxneu5 65 107 IPR000315 GO:0008270
Spst3g05179 386 SMART bboxneu5 17 64 IPR000315 GO:0008270
Spst3g05179 386 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Spst3g05179 386 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Spst3g05179 386 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Spst3g05179 386 ProSiteProfiles CCT domain profile. 299 341 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05179 Spst-Chr3 103728445 103729944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05179 1 347 C2C2-CO-like Transcription Factor Family AT5G57660 58.592 9.60e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst3g05179 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05179 - - gmx:100805693 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05179 3 103728445 103729944 Spst3g05179 3 103728445 103729944 ECH