Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05178 ATGGTACTTCCGTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAGACCCAAATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGACACCATTGTGGCTGTGCATGTGCTTGTTGCTGCGGATAAGAAGAAGCGAGTCTCTGTCAGAAGAAGGCAATCACAACTTAGACAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCAGAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCCAGGGTTGCACTGAATTCCACAGTTGGTGAAGGTTTAGTGGAGGAAACCAAGTCCATCAATGCTGACTTTCTTCTTATTTGTGGCTCAAGAAACCGAACTAATAAAATTGGAACTTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACCTGAAGGGTGTACAATTGTCTCTGTTGGAAGACATAGGAAGGCAGATCTAAGTGTCAAGTCAAACTCAACATATTTTCAAGATAATAAGCAACCAAGTTCAAGATGGTTCAAGAAGGAAAAGCAATGTGATAAGAGTGTCTCCCCTGTTCTGGAAGATTATATCTCAGGAATCAAGGCTCAGAACGGTTCACCAAGAACAGTACTTGATAGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAAGGTATCAAGCACCACGTATACCCCATCATTGGATTCTAAGATTAAGAGCCGATCCAAGATAAAACCACACTTCTCATTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTAAACATTTATAAAAATCAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCCAATGCTACCAACGATTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACGAGAATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTAGGTGTTATTGGACATGTCTGTCATCCTAATACTGCAACTTTAGTGGGCTGTTGCATAGAAAATGGACTATATCTGATATTCAATTACTCTCAAAATGGAAATTTGGCAACTGCATTGCATGGTAAAGGAAGAGATTCAGTAGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTCCATAAACGTTGCAAGCATCGAATAATTCACCGTGACATCAAAGCCTCTAATGTTCTTCTTGGTCCTGACTATGAACCACAGATTGCTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAAAACCTTCTCTTATGGGCAAAGCCTCAAATGGAATCAGGGAATATTGCTGAGCTGGCTGACCCAAGAATGGAAGGTAAGTATGATGGAGAGCAACTGTATAGGGTAGTGCTAGCGGCTTCATACTGTGTGAGACAAACTGCCACATGGCGTCCTCCAATGAGTGAGGTGCTAGAGCTGCTAACCAGTGGCGAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGATGATTACTCTATGGTTTTTGGATATGATTGGTGCTGCAACGAGACAGTCGAGCCCACAAGGGGGTGGTTTGGACTAGTGGCGCACGTGAAGGGGTATGGGCTGGACCCACTCTGTAGCCCATTTGACAGTGACCCCACTGTCTCCATCTACAGCGTCTCGCACGCGTTATCATCTGTGTTAGCATCTGTCACGCCTCCAAATCTCTTCATCCACCTCCTTCCCAC 1979 0.4356 MVLPSPAKILIGLSLDPNDSKELLSWAIRVLANPNDTIVAVHVLVAADKKKRVSVRRRQSQLRQAKAYVISVLGEFAETCWSKQVNLEARVALNSTVGEGLVEETKSINADFLLICGSRNRTNKIGTSKGITKYCFEHAPEGCTIVSVGRHRKADLSVKSNSTYFQDNKQPSSRWFKKEKQCDKSVSPVLEDYISGIKAQNGSPRTVLDSLEGQSNSTEDDTFSTKVSSTTYTPSLDSKIKSRSKIKPHFSFRFIVSFLASPFRRKNLNIYKNQKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNENPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGKGRDSVDWPIRYKIAIGVARGLHYLHKRCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPQMESGNIAELADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGEDSEVGKSWRIPKFTSDELDDYSMVFGYDWCCNETVEPTRGWFGLVAHVKGYGLDPLCSPFDSDPTVSIYSVSHALSSVLASVTPPNLFIHLLPT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05178 660 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 140 - -
Spst3g05178 660 Gene3D HUPs 4 148 IPR014729 -
Spst3g05178 660 CDD USP_Like 8 140 - -
Spst3g05178 660 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 372 576 - -
Spst3g05178 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Spst3g05178 660 Gene3D Transferase(Phosphotransferase) domain 1 373 575 - -
Spst3g05178 660 PANTHER OS08G0249100 PROTEIN 59 575 IPR046958 -
Spst3g05178 660 Gene3D Phosphorylase Kinase; domain 1 258 371 - -
Spst3g05178 660 MobiDBLite consensus disorder prediction 205 226 - -
Spst3g05178 660 Pfam Universal stress protein family 8 146 IPR006016 -
Spst3g05178 660 SMART serkin_6 295 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g05178 660 Pfam Protein kinase domain 295 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g05178 660 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Spst3g05178 660 ProSiteProfiles Protein kinase domain profile. 295 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g05178 660 FunFam Putative receptor-like serine/threonine-protein kinase 262 371 - -
Spst3g05178 660 SUPERFAMILY Protein kinase-like (PK-like) 271 562 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05178 Spst-Chr3 103681232 103689873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05178 283 594 Trihelix Transcription Factor Family AT1G70460 40.606 1.42e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Spst3g05178 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05178 - - gmx:100782832 1062.37