Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05171 ATGAAGGATAAGATATACTCTGGACGACGGGTGGGACGCCATGGGTCCCAGGACTTCCTTAAGCATCATCGTCTCCATTTTTGTGAATCCATTATTGACAAGCATTCTCCAATGGACGCACTCTATATAAAGAGGAGTTGGTTTCAAAATTTTGGATTTTCAGGACATGTAGTGGTGAAAAACTGCTCAAGATTTGTGTTGATGGTTTGGCTTCTGTTGGCGTTCGTCCTCATGCAAAGTTACACTGCTAACTTGACATCTATATTGACCTTGGATCAACTGCGACCCAGTTTTCTGAACATTAATGATCTAAGGAAAGGGGGTTATTACGTTGGATACCAATCTGGGTCTTTCGTTTACGATGTGTTGGTTGAGCAATTTAAGTTTGACCCGTCCAAACTACGGCCATACAGCAACATTTCTCAGTATCATGATGCTCTAAAGATTGGAAGCCAAAATGGGGGTGTTGCAGCCATATTCGATGAAGTGCCCTATCTTAAAGTATACCTTCAAGAATACGGATCCAATTGTATGTTGGTCGGCCCGATATATAGAAATACTGGGTTTGGTTTTGTATTCCCTTTAAACTCCAATCTCACGGCTTATTTTTCGAGAGCCATCCTGAATGTGACTGAAAGCGAGTTAATGAATGAAATAGAGGAAAAGTATTTTGGGAAGAATGATAATGGAGGAGAAGACTCGTCTGCGGAAATATCTTCCGCTCCTCTCAGTCTCAACTTTCATAGCTTTGCAGGGCTCTTCTTGATTAATGGGATTTCTACTTTATTAGCGTTGTTAGTTTCAGAAAGAATGATATGGCAAAGGCTCATTTTGATGGCTAAATCATTGAGTGAGAGGTATTTGTCACCCATTCCACTTTCAAAACACGGAACAATAGAGTAG 903 0.4075 MKDKIYSGRRVGRHGSQDFLKHHRLHFCESIIDKHSPMDALYIKRSWFQNFGFSGHVVVKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSFLNINDLRKGGYYVGYQSGSFVYDVLVEQFKFDPSKLRPYSNISQYHDALKIGSQNGGVAAIFDEVPYLKVYLQEYGSNCMLVGPIYRNTGFGFVFPLNSNLTAYFSRAILNVTESELMNEIEEKYFGKNDNGGEDSSAEISSAPLSLNFHSFAGLFLINGISTLLALLVSERMIWQRLILMAKSLSERYLSPIPLSKHGTIE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05171 300 Gene3D - 169 230 - -
Spst3g05171 300 SMART GluR_14 8 226 IPR001320 GO:0015276|GO:0016020
Spst3g05171 300 SUPERFAMILY Periplasmic binding protein-like II 79 227 - -
Spst3g05171 300 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 275 IPR015683 -
Spst3g05171 300 Gene3D - 41 128 - -
Spst3g05171 300 Pfam Bacterial extracellular solute-binding proteins, family 3 78 226 IPR001638 -
Spst3g05171 300 Pfam Ligand-gated ion channel 38 259 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05171 Spst-Chr3 103549236 103556339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05171 58 286 Ion Channels AT2G29110 43.673 4.80e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05171 K05387 - gmx:100811144 375.555