Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05160 ATGCCTCATCCGGCACACCACCCCCAATCCCAACCCCAACCCCCACCCCAACCAAAGCCTAATCCCAACCTCCTCTCCCTCTTCCTCAAACCCATCATCATGCTCCTTCTCACCTCCCTCTTCTTCGTCTTCATCGGCTTCGCCGCCTTTCTCCTCCTCCACCTCTTCCTTCTCGGCGGCGCCTTCCACCGCCTTCGCTTCCGCCCCTCTGCCGCCACCGCCTCCACCTCCAAGGCCCTCCCCCCTCGCGAAATCAACAAGCTCCCTCGCTTCCGCCTCTCCCGGGCATCCCACACCCTAACCGACGACTCCCGCTGCGTTGTCTGCTTGGACGCCTTCCGCAATGGCCAGTGGTGCCGGAAACTCGCCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAGGTCGCCGCATGCCCCACGTGCCGTACACCCGTGCGGTTCAGTGCCGGACCTCCTGTTCATCACCCGACACAAGGTTCTGCTTTTGCCCAATTTCAAAGCTGCGAAACTGACTCCAATGTTCTCGCCCTTTTATAG 555 0.6162 MPHPAHHPQSQPQPPPQPKPNPNLLSLFLKPIIMLLLTSLFFVFIGFAAFLLLHLFLLGGAFHRLRFRPSAATASTSKALPPREINKLPRFRLSRASHTLTDDSRCVVCLDAFRNGQWCRKLAACGHVFHRRCVDTWLLKVAACPTCRTPVRFSAGPPVHHPTQGSAFAQFQSCETDSNVLALL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05160 184 MobiDBLite consensus disorder prediction 1 21 - -
Spst3g05160 184 SMART ring_2 106 147 IPR001841 -
Spst3g05160 184 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Spst3g05160 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Spst3g05160 184 Pfam Ring finger domain 105 148 IPR001841 -
Spst3g05160 184 SUPERFAMILY RING/U-box 96 154 - -
Spst3g05160 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 163 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05160 19 158 C3H Transcription Factor Family AT2G18670 48.571 7.55e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05160 - - pvu:PHAVU_003G150700g 272.707