Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05134 ATGCATGATGAACCTTTTGGAATTGACCTTGGGTTATTGGGATTAGACCCTGCACCACTCAGCCAATTTGATGGTACAAAAGAAAACAAGTGGGTGAAGCAGCTTGTGGGAAGTGTGGTTCTTTATGCTCTAATGATTGGGATCATGGATGATGAGCAAATTAAATATGTGAGTGGCAAAAGTAAGATAAGGGATGGACCCAGCAGCGTTCACTTACTCACATTGGCTGCGGAGTGCAGGGAGAGGAAGGAGGCAGTAGAAGGCAGCAATATACAGTATAGTCGGGGACTGCAAAGCAAAGCAACATCTGATGGACGTTTTGATTCTCGCGGGCTTCTTCACCCTCGCAACCCCGAAGTGGAGGCTTTGATGAACATAAAAGCAGCTCTAAATGACCCACACGGCGTGTTGAATAACTGGGATGAATACTCCGTCGACGCTTGCAGTTGGGCCATGATCACTTGCTCTTCGGATTACCTTGTCATAGGCCTAGGAGCGCCTAGCCAATCTCTCTCTGGAACTTTGTCTCCAGCAATCGGAAATCTAACAAATCTTCGTCAAGTATTACTGCAGAACAACAATATCTCAGACAATATACCACCGGAACTTGGAGCCCTTTCCAAGCTTCAGACATTAGACCTTTCCAATAACCGATTCTCGGGGGCGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACTTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGAGTCACTGGCAAAAACCCCACAGCTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTCCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAGTTTGTGGGAGCAGCACTACTGAAGGTTGCTCTGGGTCAACAACGCTCATACCAATTTCCTTCTCACAAGTGTCATACGAAGGAAAACACAAGTCCAAAAAACTAGCAATAGCACTTGGGATCAGTCTTAGTTGTGCTTCTCTCATCCTCTTGCTTTTTGGACTATTTTGGTATAGAAAGAAACGACAGCATGGAACCATCCTGTATATCAGTGATGGCAAGGAAGAGGGAGTTCTTAGCTTGGGGAATCTAAAGAGTTTCACTTTCAGAGAGCTTCAACATGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTTTATAGGGGGAAGCTTGGAGATGGCACAATGGTGGCCGTGAAAAGGCTGAAAGATGTAAATGGCAGTGCCGGCGAATCACAGTTCCAAACAGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGATATTGTGCTTCTCCAAGTGAGAAACTATTGGTTTATCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACTCTAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTGCACGAGCAATGTGATCCAAAGATAATACACAGAGATGTCAAGGCCGCCAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGATTCCCATGTCACCACGGCTGTCCGTGGCACTGTTGGACACATTGCACCAGAGTACCTCTCCACCGGCCAATCATCTGAGAAAACAGATGTATTTGGATTTGGCATTCTCTTGTTAGAGCTCATAACAGGAATGACTGCACTCGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAAGGTTGCGGTGTTGGTGGACAAAGAGCTAGGAAACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACATCCCACCGCCCTAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGTGACGGGCTTGCTGAGAAGTGGGCGTCATCACATAATTACGGTAATCACGACATGAACCCCAGCCATAGCAACAATAGTAGCAATAGTTCATCCCGCCCTACCTCTGCTTCAAAACATGATGATGATGTTCATGACCGTTCCAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 2190 0.453 MHDEPFGIDLGLLGLDPAPLSQFDGTKENKWVKQLVGSVVLYALMIGIMDDEQIKYVSGKSKIRDGPSSVHLLTLAAECRERKEAVEGSNIQYSRGLQSKATSDGRFDSRGLLHPRNPEVEALMNIKAALNDPHGVLNNWDEYSVDACSWAMITCSSDYLVIGLGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISDNIPPELGALSKLQTLDLSNNRFSGAIPASLSQLNSLQYLRLNNNNLSGSFPESLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSTTLIPISFSQVSYEGKHKSKKLAIALGISLSCASLILLLFGLFWYRKKRQHGTILYISDGKEEGVLSLGNLKSFTFRELQHATDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCASPSEKLLVYPYMSNGSVASRLRGKPALDWNSRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDRIEVGEMLQVALLCTQYLTSHRPKMSEVVRMLEGDGLAEKWASSHNYGNHDMNPSHSNNSSNSSSRPTSASKHDDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05134 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Spst3g05134 729 Gene3D Ribonuclease Inhibitor 116 298 IPR032675 -
Spst3g05134 729 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Spst3g05134 729 MobiDBLite consensus disorder prediction 665 729 - -
Spst3g05134 729 Pfam Leucine rich repeat 208 267 IPR001611 GO:0005515
Spst3g05134 729 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 116 664 - -
Spst3g05134 729 SUPERFAMILY L domain-like 117 286 - -
Spst3g05134 729 FunFam Somatic embryogenesis receptor kinase 1 355 461 - -
Spst3g05134 729 Gene3D Transferase(Phosphotransferase) domain 1 462 672 - -
Spst3g05134 729 MobiDBLite consensus disorder prediction 691 709 - -
Spst3g05134 729 Pfam Leucine rich repeat N-terminal domain 117 156 IPR013210 -
Spst3g05134 729 FunFam Somatic embryogenesis receptor-like kinase 1 462 674 - -
Spst3g05134 729 Gene3D Phosphorylase Kinase; domain 1 356 461 - -
Spst3g05134 729 ProSiteProfiles Protein kinase domain profile. 385 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g05134 729 SMART serkin_6 385 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g05134 729 Pfam Protein kinase domain 386 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g05134 729 MobiDBLite consensus disorder prediction 668 690 - -
Spst3g05134 729 FunFam Putative LRR receptor-like serine/threonine-protein kinase 116 298 - -
Spst3g05134 729 SUPERFAMILY Protein kinase-like (PK-like) 367 655 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05134 Spst-Chr3 103024681 103032535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05134 111 729 Receptor kinase-like Gene Family AT5G16000 65.342 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Spst3g05134 Pkinase 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05134 - - gmx:100797186 1103.2