Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05115 ATGCACACATTAGGTGGACACACCAAAACCTGCAAGCCTCAGTTTTCCTTCATAAAACATAATCTTTGCTCTCAACTTCACCCCCCACTATTGTTGTGTTGTGTCACATTCTTGTCCCATTCACCAGTCACCACCACCAACATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATCGGAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATATGTGGCGATGATGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGCATGCCGACCATGCTATGAATACGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCACGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATCGAACATGAATTCAACATTGATGACCAAATGAACAAGCATAATCACTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTACGGAAGAGGTCCTGAAGATGATGAGAATTCTCAATTCCCAGCTGTCATAGCTGGCGGTCGTTCTCGGCCTGTTAGTGGAGAGTTGCCAGTAACATCTCATTATGGGGAGCACTCTTCATTGCAGAATCGTGTGTACCCATATCCGGCATCTGATCCTAGAAATGGAAAATGGGATGAAACCAAAGAGGATAGAATGGATGACTGGAAATTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCGGATGCAGCCATGTTAGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCGATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCACGGCTTGTTATCCTTGCCTTCTTCCTCCGATATAGACTGATGAATCCTGTACATGATGCACTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATACTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAATTAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACAGTGGATCCCATGAAGGAACCTCCATTGGTTACAGCAAACACTGTTCTCTCAATCTTGGCCATGGATTACCCAGTTGAGAAGATATCGTGTTACATTTCCGATGACGGAGCTTCAATGTGTACATTTGAGGCCCTGTCAGAAACTGCAGAGTTTGCAAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATAGAACCTCGAGCACCGGAGATGTACTTCTGTGAGAAAATTGATTACCTAAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTGGTTGCAAAAGCTCAGAAGGTTCCACAAGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGAATGATTCAAGTGTTTCTTGGTCACAGTGGAGGTCATGATACAGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTGTCCCGAGAGAAAAGGCCAGGATTCCAACACCACAAGAAAGCTGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAGGCTGCTCGAGAGGCCATGTGCTTCTTAATGGACCCCCAAACTGGAAAGAAGGTCTGCTATGTCCAGTTCCCTCAAAGATTTGATGGCATTGATAGGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGCGTATGTTGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTATACGGTTATAATCCTCCCAAGGATACCAAGCGTCCAAAAATGATAAGTTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGGTGAAAATGGAGAGGCTGCAAGCCTAAGAGGAATGGATGATGATAAAGAGATGTTGATGTCCCAGATGAACTTTGAGAAGAAATTTGGCCAGTCATCCATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGTTGTGGATATGAAGATAAAACTGAATGGGGTATTGAGCTGGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCTAAGCGACCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGGCTTAACCAGGTTCTTCGTTGGGCACTTGGCTCCATTGAGATCTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTATAAGGAAGGGAAGTTGAAGTGGCTTGAGCGATTTGCGTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTAGCCTACTGTGTTCTTCCTGCTGTCTGCTTACTCACTGATAAATTCATTATGCCACCGATAAGCACTTTTGCGGGTTTGTACTTTGTTGCTCTATTCTCTTCAATTATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCACCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAGGAATTTGGAGAACTATACACCTTTAAGTGGACTACCCTCCTGATTCCTCCAACCACTATCCTAATAATCAACATTGTTGGTGTTGTTGCTGGAATCGCAGATGCCATAAACAATGGGTATCAATCCTGGGGACCTCTATTTGGAAAACTATTCTTTTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGCCGCCAAAACCGTACACCCACCATAGTTGTTATATGGTCAGTACTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTCGTCTTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3237 0.4486 MHTLGGHTKTCKPQFSFIKHNLCSQLHPPLLLCCVTFLSHSPVTTTNMEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGPEDDENSQFPAVIAGGRSRPVSGELPVTSHYGEHSSLQNRVYPYPASDPRNGKWDETKEDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKDTKRPKMISCDCCPCFGKRKKVKYEGNGENGEAASLRGMDDDKEMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGIADAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05115 1078 ProSiteProfiles Zinc finger RING-type profile. 84 130 IPR001841 -
Spst3g05115 1078 FunFam Cellulose synthase 487 661 - -
Spst3g05115 1078 Pfam Zinc-binding RING-finger 74 151 IPR027934 -
Spst3g05115 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 273 1045 - -
Spst3g05115 1078 CDD mRING-HC-C4C4_CesA 82 132 - -
Spst3g05115 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 383 839 IPR029044 -
Spst3g05115 1078 MobiDBLite consensus disorder prediction 198 245 - -
Spst3g05115 1078 FunFam Cellulose synthase 66 157 - -
Spst3g05115 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 661 IPR029044 -
Spst3g05115 1078 Coils Coil 468 488 - -
Spst3g05115 1078 Pfam Cellulose synthase 370 1072 IPR005150 GO:0016020|GO:0016760|GO:0030244
Spst3g05115 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 156 IPR013083 -
Spst3g05115 1078 SUPERFAMILY RING/U-box 68 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05115 Spst-Chr3 102841332 102846422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05115 48 1078 Cell Wall Biosynthesis AT5G17420 86.074 0.0 1834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05115 K10999 - gmx:100779834 2061.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05115 3 102841332 102846422 Spst3g05115 3 102841332 102846422 ECH