Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05102 ATGCCACCGAAGAAGGGAAATCAATCTAAGCCAGAAAGATCAGCGGACGAGGAAAACATGGAAGCACGTGTTAGCTCTGTGGAAAATGAGATTGCTCGAATGAGGATAACGATGGAGAATTTTCAAGAAGCGATAAAACGCGAAGTTCAAGAGAACCACTCGATACTCGTCGAGCTTTTGACTCGAAATTCTGGGAAAGATCTAGAGGGGGAAGATGAAGGTTCAGTGAAGAAGAAGAGCACATATCTTCAGTCTCTCACCATTAGACTAGAGGAAATGAGAGTTAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTACTCCCACCAGAGCTCAGGGAGCGTGTGAGACGGTATGATCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAACGTCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATCTGTGAGAGACTGAAACCATGTTTATTTACAGAGCATACTTACATTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGTCTTGAAAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTTCTAAAGGAGGCCGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCTACTAGAACAGTTAAAGCATTAATGGAGGTTGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCCAGTCAATTTAGACGCCTTCACAGTAGACAGGTTCAACACACTTTCCGCTTTTACTCCCAGCAATGGAGGACTTGGGCTGCATGTTTTATTCAAGCAGCATGGCGTCGCTATTCTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGGTGCTGATGAATCAGAAGGAACTCATGAAAATGTTGGTGGAAGTTCCTACAGCTTTGGTGCTGCCCTGTTAGCCTCAAAGTTTGCTGCACACACTCTTCGTGGTGTACATCGTAATCGACTTGCTAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCCCCAGAGCCTGACTTCTCTGCAGATGATGCCGACTAA 1173 0.4442 MPPKKGNQSKPERSADEENMEARVSSVENEIARMRITMENFQEAIKREVQENHSILVELLTRNSGKDLEGEDEGSVKKKSTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPPELRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEHTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEGADESEGTHENVGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05102 390 CDD CAP_ED 162 293 IPR000595 -
Spst3g05102 390 SMART cnmp_10 162 293 IPR000595 -
Spst3g05102 390 FunFam Cyclic nucleotide-gated ion channel 1 89 153 - -
Spst3g05102 390 SUPERFAMILY cAMP-binding domain-like 91 282 IPR018490 -
Spst3g05102 390 ProSiteProfiles cAMP/cGMP binding motif profile. 162 246 IPR000595 -
Spst3g05102 390 MobiDBLite consensus disorder prediction 1 24 - -
Spst3g05102 390 FunFam Cyclic nucleotide-gated ion channel 1 160 278 - -
Spst3g05102 390 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 384 - -
Spst3g05102 390 Gene3D Jelly Rolls 160 280 IPR014710 -
Spst3g05102 390 MobiDBLite consensus disorder prediction 9 24 - -
Spst3g05102 390 Pfam Cyclic nucleotide-binding domain 183 273 IPR000595 -
Spst3g05102 390 Coils Coil 17 51 - -
Spst3g05102 390 Gene3D Helix hairpin bin 89 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05102 Spst-Chr3 102719726 102726389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05102 76 388 Ion Channels AT2G23980 81.191 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05102 K05391 - gmx:100784327 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05102 3 102719726 102726389 Spst3g05102 3 102719726 102726389 ECH