Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05095 ATGATTTTGGTTCTCTTGTTCAAGCATTTGGCATCTCAGCAACCAAATACCGATGAGTTCTTCGTGTCCGAGTTCTTGAAGAATATGAGTTTAACATCCTCACAAGCCTACAATTTCTCTGCTTCTGTCTGTTCATGGCAAGGGGTTTCTTGTGATGCCAGTGGAAAACATGTTGTTGGCTTAGTCTTTTCTGGTATGGACCTCTCTGGCACTATACCTGATAACACCATAGGCAAGCTGGGCAAACTTCAATCTTTGGATCTTAGCCACAACAAAATCACCGGCTTGCCGTCAGATTTTTGGAGCTTAAGCTCTCTCAAGAGCCTTAACCTCTCCTCGAATAATATTTCTGGTTCATTGACTAATAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCAGAGGAAATTCCTGAAGCTGTTACCTCACTTTTGAGTCTGAGGGTCCTCAAACTCGACCACAACAAGTTTGCACACAACATACCTTCTGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAACACTTCCAGAAGGTTTTGGTGCTGCTTTTCCTAAGCTTAGGATATTGAACCTTGCTGGGAATAGTTTGTATGGTCGTGTTTCAGATATTTCTGGGTTAAAGTCCATTGTTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCATTGTGGATGTGTTTCAGGGAAGTTTGGAGGTTCTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTCCACAGGTACTATACAACTTTAGTAGTTACAATTGGTCTCATTTAGTTTACCTAGATTTGTCAGCGAATAAGCTTAGTGGAGAGTTTTTTCAAAAGTTGAACGAATCCTTGAATTTAAAACACATCAATGTTGCATACAATAGATTTACCAGACAGAAATTCCCCCAAATTGAAATTCTCCTGAAATTGGAATATCTGAACTTGTCCAAAACTAGCCTAGTTGGTGAAATTCCCGGTAAAATCTCACGATTACGCAATTTGAATGCACTTGATCTTTCTTTGAACCATCTGAGTGGGAAAGTTCCCTTACTGAGTAGTGAACACCTCCAAATCCTTGAACTTTCAAACAACAATTTGACTGGAGCAGTCCCTCAATCTGTCTTGGAGAAACTCCCATGGATGAAGAAATACAACTTCTCCTATAATAACCTAACCCTTTGTGCTTCTGAAATTAAACCCGAGATCATGCAAACAGCATTCTTTGGATCATTGAACAGTTGTCCAATTGCTGCAAACCCGCGACTCTTCAAAAGAAGAGACACTGGACACACGGGAATGAAACTAGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTTGCTGGGCTTTTGTTTCTAGCATTTGGTTGCCGAAGGAAAACAAAAATGTGGGAATTCAAGCAATCTTCATATAAAGAGGAGCAAAACATTTCCGGTCCCTTTTCATTCCAGACCGATTCAACAACTTGGGTGGCTGATGTGAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGGGGCACCCTTTTGGCTGAAGGAAAATTTGGACCAGTCTATAGAGGCTTTCTGCCTGGTGGTATTCATGTGGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAAGAAGCTGCAAGAGAGCTAGAGTTTCTTGGCAGAATCAAGCACCCCAATCTTGTTCCCTTAACTGGATATTGTGTAGCAGGGGACCAAAGAATTGCCATATATGATTACATGGAGAATGGTAACTTGCAAAACCTACTTTATGACCTGCCACTTGGGGTACAAAGCACAGATGATTGGAGCACAGACACATGGGATGAAGCTGACAACAATGGCATTCAAAATGCTGGCTCTGAAGGATTACTCACATCTTGGACATTTCGCCACAAGATAGCCCTTGGCACGGCTCGAGCATTGGCATTTTTGCATCATGGTTGCTCCCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGACTACGACTTGGAGCCAAGGTTGTCTGATTTTGGACTGGCCAAGATTTTTGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCAGAGTTTACTCAACCAGAATTGGACACCCCGACACCAAAATCTGATGTGTACTGTTTCGGGGTGGTGCTCTTTGAGCTAGTAACTGGAAAGAAGCCAGTTGGAGATGACTACCCTGATGATAAAGAAGCAACTTTGGTGAGTTGGGTCAGAGGACTTGTCAGAAAGAACCAAGCTTCAAGAGTTATTGATCCAAAAATTCGTGACACAGGACCAGATGAACAAATGGAAGAGGCTCTTAAGATTGCTTATCTTTGCACTGCTGACCTTCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTAAAGGATATTGAACCTACTGCTAATTAG 2538 0.4212 MILVLLFKHLASQQPNTDEFFVSEFLKNMSLTSSQAYNFSASVCSWQGVSCDASGKHVVGLVFSGMDLSGTIPDNTIGKLGKLQSLDLSHNKITGLPSDFWSLSSLKSLNLSSNNISGSLTNNIGNFGLLESIDLSSNNFSEEIPEAVTSLLSLRVLKLDHNKFAHNIPSGILKCQSLVSIDLSSNQLNGTLPEGFGAAFPKLRILNLAGNSLYGRVSDISGLKSIVNLNISGNSFQGSIVDVFQGSLEVLDLSRNQFQGHIPQVLYNFSSYNWSHLVYLDLSANKLSGEFFQKLNESLNLKHINVAYNRFTRQKFPQIEILLKLEYLNLSKTSLVGEIPGKISRLRNLNALDLSLNHLSGKVPLLSSEHLQILELSNNNLTGAVPQSVLEKLPWMKKYNFSYNNLTLCASEIKPEIMQTAFFGSLNSCPIAANPRLFKRRDTGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWDEADNNGIQNAGSEGLLTSWTFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFTQPELDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKEATLVSWVRGLVRKNQASRVIDPKIRDTGPDEQMEEALKIAYLCTADLPFKRPSMQQIVGLLKDIEPTAN 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05095 845 SUPERFAMILY L domain-like 34 410 - -
Spst3g05095 845 Pfam Protein tyrosine and serine/threonine kinase 543 835 IPR001245 GO:0004672|GO:0006468
Spst3g05095 845 PRINTS Leucine-rich repeat signature 83 96 - -
Spst3g05095 845 PRINTS Leucine-rich repeat signature 103 116 - -
Spst3g05095 845 SMART LRR_typ_2 246 269 IPR003591 -
Spst3g05095 845 SMART LRR_typ_2 103 127 IPR003591 -
Spst3g05095 845 SMART LRR_typ_2 80 102 IPR003591 -
Spst3g05095 845 SMART LRR_typ_2 151 175 IPR003591 -
Spst3g05095 845 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 219 840 - -
Spst3g05095 845 Gene3D Phosphorylase Kinase; domain 1 499 614 - -
Spst3g05095 845 FunFam Nuclear pore complex protein NUP107 19 170 - -
Spst3g05095 845 FunFam Putative LRR receptor-like serine/threonine-protein kinase 500 614 - -
Spst3g05095 845 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Spst3g05095 845 Pfam Leucine rich repeat 72 116 IPR001611 GO:0005515
Spst3g05095 845 SUPERFAMILY Protein kinase-like (PK-like) 516 837 IPR011009 -
Spst3g05095 845 FunFam Calmodulin-binding receptor kinase CaMRLK 246 365 - -
Spst3g05095 845 Gene3D Ribonuclease Inhibitor 271 429 IPR032675 -
Spst3g05095 845 ProSiteProfiles Protein kinase domain profile. 539 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g05095 845 Gene3D Transferase(Phosphotransferase) domain 1 615 845 - -
Spst3g05095 845 ProSiteProfiles Leucine-rich repeat profile. 82 103 IPR001611 GO:0005515
Spst3g05095 845 Gene3D Ribonuclease Inhibitor 19 270 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05095 Spst-Chr3 102661979 102664516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05095 68 840 Receptor kinase-like Gene Family AT5G07280 33.040 2.48e-113 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Spst3g05095 PK_Tyr_Ser-Thr 4.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05095 - - gmx:100787157 1524.61