Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05083 ATGCAAGGCCCTAACAATAACTCTCTCTGTAATAATCACCAAGAAATCCACTTCGACGCCACTTCCAACGACGATTTCCTCAAACAAATGCTCTCCAACCTCCCTTCTTCATCATGGACTCTAGACCCCAAACCCAACCCCTTGTGGGACCCTAATTCCGACGAAACCACACCGGATAACAACCTCGTTTTCCCCTACGACCTCCAACAAGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCAGCGATGACAACAAACCCTCCGCTCTCATGCTCCAACACCACCACCACCTCCTCCTCTCCTCCGCCGCCGCTGCTGCCAATTCCCCCCTCCTCCACGTCCCCTTGTCCGACGTCGTTGACGCCCCCTCCTTCAAATCTCCCTCTCCCAACGGTGAGGCTTCTTCCGTTCAACCTCTCTACAACGGCTTCTCCGGATCTCTCCAAGGCGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCTCAGCAGGGGCAGAGTTTCGGAGCTTCGGCTCCGACTAGTGGTGCTGGCGGTGGTTCGGGTCAGCCCAAGCAGAGGGTTAGAGCCAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCTTGCAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCCTCCATGTTGGATGAGATCATCGACTATGTGAAGTTCCTACAGCTCCAAGTAAAGGTTTTAAGCATGAGTAGACTAGGAGGTGCAGCGGCTGTTGCACCCCTTGTTACTGATTTATCTTCCGAGCAGGGAGGCGGTGACTGCGTTCAGCCAAAACGCAACAGCGCGAACGGTAACGGTAACTCAAACGGCAACGAAGGTTCCTCAAACGACAGTGTGGCCATGACGGAGCAACAAGTGGCGAAGCTGATGGAGGAAGACATGGGGTCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTGATGCCAATTTCTCTGGCCACGGCCATCTCCAAAGCCACGTGTCACACCAGGAACCCTTTCATCAACGGTGATGGCCCCTCCTCTCCCGGAATCTCCGCGCTCACCCTCCACTCTTCTTCTGTGGCTAACGCCCTCGTCAAAGACGCTGCCTCTGTTTCCAAATCCTGA 1170 0.5521 MQGPNNNSLCNNHQEIHFDATSNDDFLKQMLSNLPSSSWTLDPKPNPLWDPNSDETTPDNNLVFPYDLQQANLASKFRNHQISDDNKPSALMLQHHHHLLLSSAAAAANSPLLHVPLSDVVDAPSFKSPSPNGEASSVQPLYNGFSGSLQGAAQPSNQTHHFQLPQQGQSFGASAPTSGAGGGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVTDLSSEQGGGDCVQPKRNSANGNGNSNGNEGSSNDSVAMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFINGDGPSSPGISALTLHSSSVANALVKDAASVSKS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05083 389 Pfam Helix-loop-helix DNA-binding domain 202 247 IPR011598 GO:0046983
Spst3g05083 389 Gene3D - 192 254 IPR036638 GO:0046983
Spst3g05083 389 MobiDBLite consensus disorder prediction 129 184 - -
Spst3g05083 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 257 IPR036638 GO:0046983
Spst3g05083 389 MobiDBLite consensus disorder prediction 193 207 - -
Spst3g05083 389 MobiDBLite consensus disorder prediction 126 207 - -
Spst3g05083 389 SMART finulus 203 252 IPR011598 GO:0046983
Spst3g05083 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Spst3g05083 389 MobiDBLite consensus disorder prediction 275 305 - -
Spst3g05083 389 FunFam Transcription factor bHLH66 194 259 - -
Spst3g05083 389 MobiDBLite consensus disorder prediction 273 305 - -
Spst3g05083 389 MobiDBLite consensus disorder prediction 36 57 - -
Spst3g05083 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05083 Spst-Chr3 102501939 102505871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05083 173 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 60.417 3.11e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g05083 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05083 - - gmx:100801457 486.878