Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05082 ATGGCTGCTGGGACTGGCCTCTTTGCAGAGATTTTGGATGGAGATGTGTACAAGTACTATGTTGATGGGGAGTGGAAGAAATCTTCTTCTGGGAAAAGTGTTCCCATCGTCAACCCCACCACAAGGAAGACTCAATACAGAGTTCAAGCCTGTTCACAAGAGGAGGTTAATAAGGTCATGGACTTAGCAAAATCTGCACAAAAATTATGGGCAAAGACCCCACTATGGAAGCGAGCTGAACTTCTTCACAAGGCAGCTGCCATCCTTAAAGAGCACAAGGCTCCCATTGCAGAGTGCCTTGTTAAAGAAATAGCAAAGCCAGCCAAAGATGCTGTTACAGAGGTTGTAAGATCTGGGGATCTGGTTTCTTACTGTGCTGAAGAAGGGGTAAGGATTCTGGGTGAGGGAAAGTTCTTGGTGTCGGATAGCTTTCCTGGAAATGAAAGGACTAAATACTGCCTCACATCCAAGATTCCACTTGGAGTGATTTTAGCCATTCCACCTTTTAACTACCCTGTCAATCTTGCTGTCTCCAAAATTGCTCCTGCACTGATTGCTGGAAACTCCATTGTGCTCAAGCCTCCAACTCAGGGAGCCGTTTCTGCTTTGCACATGGTTCACTGCTTTCATTTGGCTGGTTTTCCCAGAGGCCTAATCAACTGTGTCACTGGCAAAGGCTCAGAAATTGGTGACTTTCTGACAATGCATCCAGGAGTGAACTGTATCAGCTTCACTGGTGGAGATACTGGCATTGGAATTTCAAAGAAAGCAGGCATGATTCCTCTGCAAATGGAGTTGGGAGGAAAAGATGCCTGCATTGTACTTGAGGATGCTGACCTGGATTTGGTTGCAGCAAACATTATAAAGGGAGGCTTTTCATATAGTGGTCAGAGGTGCACTGCTGTTAAGGTTGTCCTGGTAATGGAGTCTGTTGCTGATGCTTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAACTGACTGTTGGAGCACCAGAGGATGACTGTGATATCACTCCAGTTGTGTCTGAATCATCAGCCAATTACATTGAAGGCCTGGTCTTGGATGCTAAGGAGAAAGGAGCAACATTCTGCCAGGAATACAAAAGAGAAGGCAATCTCATTTGGCCTTTGCTACTGGACAATGTCAGGCCAGACATGAGAATTGCATGGGAAGAGCCATTTGGACCCGTTTTGCCTGTAATTAGGATCAATTCAGTTGAAGAAGGAATCCATCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGACGTCAACAAGGCAATAATGATCAGTGATGCAATGGAAACGGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGGCCAGACCATTTTCCCTTTCAGGGTATAAAGGACAGTGGCATTGGATCTCAAGGGATAACGAACAGCATAAACATGATGACCAAGGTTAAAACGACTGTGATCAACTTACCCAGCCCTTCCTACACCATGGGCTAG 1494 0.4558 MAAGTGLFAEILDGDVYKYYVDGEWKKSSSGKSVPIVNPTTRKTQYRVQACSQEEVNKVMDLAKSAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPRGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIGISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLTVGAPEDDCDITPVVSESSANYIEGLVLDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAIMISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05082 497 Pfam Aldehyde dehydrogenase family 25 484 IPR015590 GO:0016491
Spst3g05082 497 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 23 282 - -
Spst3g05082 497 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 268 458 - -
Spst3g05082 497 CDD ALDH_F11_NP-GAPDH 16 488 - -
Spst3g05082 497 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 264 271 IPR029510 GO:0016491
Spst3g05082 497 PANTHER ALDEHYDE DEHYDROGENASE 4 496 - -
Spst3g05082 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 458 IPR016163 GO:0016620
Spst3g05082 497 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Spst3g05082 497 SUPERFAMILY ALDH-like 16 488 IPR016161 GO:0016491
Spst3g05082 497 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 484 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05082 Spst-Chr3 102494418 102498647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05082 3 497 Aldehyde Dehydrogenase Gene Family AT2G24270 90.505 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05082 K00131 - gmx:100789100 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05082 3 102494418 102498647 Spst3g05082 3 102494418 102498647 ECH