Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05078 ATGGAAGCAAATTGCATTAGGAAGCTCCAAAGTGAGTTGGGGCTCTCCCAGCACATTCTAGTGGTGCCTTGTGGACAATTACCTGGTGCAGCATCAATACCTGCAGTAACTAGTTCTACTCCAGGAGGTCCTCCTGGTCAGATTCGTCCACTAGTTAACATGAATCCTGTGGCTGGTCATGGCAGAGGGGACTGGAGATCAGCTGGAGTAAAAGGTGCTGCTGCCATGCAAAAAGGATTGCAAGCAGGTTCTGGATTACCTATGCGGGGACACAATGCTGCAGGGCGGGGTTTTGGTGGTGGATTGGAATTCATGCTTCCTTCACAAAAGACAATATTTAGTGTTGATATTGATAGTTTTGAGGAGAAACCATGGAAATATCCCAGTGTTGATGTATCAGATTTTTTCAACTTCGGTTTGAATGAGGACACCTGGAAAGATTATTGCAAACAACTGGAACAACTACGTCTGGAGTCTTCAATGCAAAGCAAGATCCATGTTTATGAGAGTGGTCGAACAGAGCAGGACTATGATCCAGATTTGCCCCCTGAATTAGCTGCAGCTTCTGGTATAATACATGATGTTCCTGTTAATAATGCTAATTCTGTAACGTCTGGACAAAATGATCTCATAAAAGGTTCTGGACCTATGCGACCACCAATTCCAAATGGGAGAGCAATACAGGTGGAAAGTGGTTCCGGTGAACGTCTTCCTTCCATTGACACTCGACCTCCTCGAATTCGTGATTCGGATGCAATCATTGAGATTGTTTTACAGGATCCAGCAGATGATGATTCCAATGTGAAAATTGATGTTCAAGATGAACAAGAGGATGGTGAGCCCCAGAGAAAGGATTTTAGCGAGGACCATGTAGCTGGGCATGAAATTCCAAGGTTAGAGTCTGAGTCCTTCAATGGTCAAAAGAGATTGCTGACTGGAAGAAGAATGCCAAATATGAAAGCTCGTCCTATTAACATACCTGTAGAAGATGAAAATTTGCCCTTCCCCCAGGAAAAGACAATCGACTACTCTGATTCTAGGCACCAAACTCCCAGGCAAATGCAAGGAAGTGAATGTGATCAGTCTCCTCGTATTACTTGTAGTCGAGAAGTGACAATTATTGACAATAAAAAAGAAGAGTCGAGTGAAAGCATGAAAGGTAGGCATAATGCGCACTTGTCATTTCCTGCCATTGAAGATCTAAAGGAATCCAGCATAAAAAGCAAGCAGCTTGAGGAAACTGGGACAACTGATGGAACTTCCACGGTGGAAAAGGAAGACATTGATTTAAATATAGTGGACAACAGTGATACCATTAAGGATGGGGTAGCAGAGAGTCAGAAAATAACATCTCAAGTTGAGGAACCTTGTCTTGGTGATGGAAGTGACTGGGAGGACTCAAAATCTGTAAGAAGCAGCGACAACAGCAGAGCAAAATCAGAAAGCAGCAGGGATTATCATAAGCAATGGGATGGTTTTGAAGTAGTTGAGGATCCCAAATCTGTCAATCTGGGTAGCATTAGAATGCAATCTGATGAAAATGATCAGGCATTCCGTAGAAGAAAGCAGGATGGGGGAAAGAAACCAGAGAGAAATGGTTTGGTAATTAGAAGTAGAGAGGATTCATACCCTCACAAAGATCGGCACCCTAGCTCAGCACATCAATCACGCATAAAGATTGATGGATTTGATTGTCAAAGGGATAGGGTTAGCTCTGACATGGATTGGGAATGTAGAGAAGATGATCACTTTGGTAGGAGCGGTAAAAATGATGAGCCCAGAAAGGACAGAGGGGACAGGGGTAGGGTTCGGGAAAATGAGAGAAGCAACAATGAGAATACATTTCATTCAAGAAAAGAGTTGGGTAATGGTAGCTGCAGGGTTCCATATGACAAGGATGTCAGGTCAAGAGTCTCAAGATACAAGGAAAGAGATGATAGCTTAAAAGATAAACATGAAGCTGTGGAGGATTTCCATAACAAGAGGAGGACGAATGAGGAATATCTTAAGAGGGAGCATGTAGCCAAAGAAGTTGTGCGTGGCTATAGAGAAAATGTCAGTCAGCACAAGCCAGAAAAGGATTCAATATTGGATCCACGGAAGAGGGATGGTCATCAAAGAAGTAGAGATAACCTTGATGTACAATATGCTGCCAGGCAAAAAAATGAGGCATGGCTACTGAGGGAGAGGGGTAATAGGAAGAGAGATAGAGAGGAGTGGCATCAGGTGAAACAGCCTCGGGAAGAACATCCATTCAAGCTAGAAAGAGGAGGGCAGTGTTCTGTAAGAAGTGGAGGAGGAGTTGAAAAGATATTGGTTGGCCATGTTAGGGCTAAGGATGAACATAAAGTTTTTGAGAAAGAATACCAACCTAGAGAAGCAATGCGACCCAGTGACCGATTGAAAACAACAGACCAAAATAAAAGTGAAAGCCCACTTCGCAAGGGGCATGATGATGCTTTTGTTCATGGAAATCATTACAATAGTGATGAAAGGCGATCCCGGGAGGAAAAATCAAGTACTCGAGGTTATTGTGCCACTAATGCTTTAGATAGTCAAAGAGTTCATGAGAGAAAGCGTGATGAAGGCTCAAAGAAAAGCAAAGAAACTATTGTTGGTAGTTTAGGCATTTCCAAGAGAAGTTCAGAAGATCAAAGTAGTCAGATCAATGACAAGGGCATGAAAGGCTCTGGCGATGCAGAACATGCAGAGGATGAAATTCCAGGGCATCGGCTGTCGAGAAAAAAACATGGGGAAAACAATTCAGATGATGAACAGAAAGATTCTCAACGAGGAAGATCTAAATATGAACGCTGGACAAGCCATAAGGAAAGGGATTTCAATATCAGCAGCAAGTCATCGTCTTCCTTAAACTTCAAGGACCTTGATAAGGATAATAATGATAGGTCTTCTGAACCTGGGAAACCTGTTGACAATTCTACCGAGTTAGTTTATACCAATAACCCACCAGTGTTATCAATTGAGGGGAAGGCTTTAGTAGATATGGAGATTAAGGATGCTAAAGCCAAAGATCTAGAGGATCAGCACCCTGACACTGTCGAGAAGTTGAAGAAGCGTAGTGAGCGGTTCAGGGTTCCAATGGCAAGTGAGAAGGAGACCCTAGTTATCAGAAAGTTAGAGGGAGAACCTCAGCCTTCAGCGGAAAATGAAAATCAAATGGATTCAGAGGTCAAACAAGAGCGACCACCCCGGAAAAGGAGGTGGATAGCAATTGCCGCCGCCGCCGACGCAGTCGCAGTCCTTAACCACCACCGAGAAATCGCCAAAGCCGTGAAACCAGTGGCCGCCTTCCAGTGCTTCTGTTACAATCCCAATTCATGTTATTCCAACCCCCAAGAAATCAAAGGATCAGAAAATATTATCCTAGATTTGCTGTTCGGCAGTAGTTTTCTTTTTCAATTGTTAAACTTGATGTCTAGAAGAACCCCATTGCCTCGTCTCCTCCTTAACAATGTCTCTTGTATGAGAAATGCCCAGCAAGTTCTGCGTCATGTGAATGTCTCTCTTCATGATGGAGGGGCGCTTGTGCTAACAGGTGCAAATGGCTCGGGGAAGACAACTTTCCTGCGCATGTTAGCTGGGTTTTCTCGTCCTTCCGCTGGTGAAATTCTTTGGAATGGCCATGACATTCAACAATCTGCAATATTCCATCAGTATAAGCTTCAGCTTAACTGGCTCTCTTTCAAGGACGCCATTAATGATAAGTTCACAGTTCTTAACAATGTACAATGGTTTGAACTTCTTGAGAATAAGGAAGGGAAGGCTATGGCCGCAGTTGAGTTGATGGGACTAGGAAAATTAGCCAATGAAAAACCAAGGATGCTATCTATGGGCCAGCGTAAAAGACTACAACTTGCCAGATTGCTGGCTATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCAGTTGCTCTAGATGATGAAGGTGTGAAGTTACTTGAGTATATCATAGCAGAACATAGGAAACACGGAGGAATTGTGATTGTGGCGACTCATCTACCCATTGAGATAGAAGATTCCATGGTCTTGAGACTTCCAACTAGGTTTCCGCGGAGGATGACCCATGTGGATATGCTTGACAGGGCGGATATCAGTTGA 4119 0.4358 MEANCIRKLQSELGLSQHILVVPCGQLPGAASIPAVTSSTPGGPPGQIRPLVNMNPVAGHGRGDWRSAGVKGAAAMQKGLQAGSGLPMRGHNAAGRGFGGGLEFMLPSQKTIFSVDIDSFEEKPWKYPSVDVSDFFNFGLNEDTWKDYCKQLEQLRLESSMQSKIHVYESGRTEQDYDPDLPPELAAASGIIHDVPVNNANSVTSGQNDLIKGSGPMRPPIPNGRAIQVESGSGERLPSIDTRPPRIRDSDAIIEIVLQDPADDDSNVKIDVQDEQEDGEPQRKDFSEDHVAGHEIPRLESESFNGQKRLLTGRRMPNMKARPINIPVEDENLPFPQEKTIDYSDSRHQTPRQMQGSECDQSPRITCSREVTIIDNKKEESSESMKGRHNAHLSFPAIEDLKESSIKSKQLEETGTTDGTSTVEKEDIDLNIVDNSDTIKDGVAESQKITSQVEEPCLGDGSDWEDSKSVRSSDNSRAKSESSRDYHKQWDGFEVVEDPKSVNLGSIRMQSDENDQAFRRRKQDGGKKPERNGLVIRSREDSYPHKDRHPSSAHQSRIKIDGFDCQRDRVSSDMDWECREDDHFGRSGKNDEPRKDRGDRGRVRENERSNNENTFHSRKELGNGSCRVPYDKDVRSRVSRYKERDDSLKDKHEAVEDFHNKRRTNEEYLKREHVAKEVVRGYRENVSQHKPEKDSILDPRKRDGHQRSRDNLDVQYAARQKNEAWLLRERGNRKRDREEWHQVKQPREEHPFKLERGGQCSVRSGGGVEKILVGHVRAKDEHKVFEKEYQPREAMRPSDRLKTTDQNKSESPLRKGHDDAFVHGNHYNSDERRSREEKSSTRGYCATNALDSQRVHERKRDEGSKKSKETIVGSLGISKRSSEDQSSQINDKGMKGSGDAEHAEDEIPGHRLSRKKHGENNSDDEQKDSQRGRSKYERWTSHKERDFNISSKSSSSLNFKDLDKDNNDRSSEPGKPVDNSTELVYTNNPPVLSIEGKALVDMEIKDAKAKDLEDQHPDTVEKLKKRSERFRVPMASEKETLVIRKLEGEPQPSAENENQMDSEVKQERPPRKRRWIAIAAAADAVAVLNHHREIAKAVKPVAAFQCFCYNPNSCYSNPQEIKGSENIILDLLFGSSFLFQLLNLMSRRTPLPRLLLNNVSCMRNAQQVLRHVNVSLHDGGALVLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHDIQQSAIFHQYKLQLNWLSFKDAINDKFTVLNNVQWFELLENKEGKAMAAVELMGLGKLANEKPRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKHGGIVIVATHLPIEIEDSMVLRLPTRFPRRMTHVDMLDRADIS 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05078 1372 MobiDBLite consensus disorder prediction 345 658 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 874 893 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 729 765 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 895 949 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 461 495 - -
Spst3g05078 1372 NCBIfam heme ABC exporter ATP-binding protein CcmA 1156 1351 IPR005895 GO:0017004|GO:0022857
Spst3g05078 1372 MobiDBLite consensus disorder prediction 630 658 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 513 615 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 419 434 - -
Spst3g05078 1372 PANTHER FIP1[III]-LIKE PROTEIN 28 1076 IPR044976 GO:0006397
Spst3g05078 1372 SMART AAA_5 1178 1366 IPR003593 GO:0016887
Spst3g05078 1372 Pfam Fip1 motif 115 156 IPR007854 -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 777 840 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 199 248 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 371 387 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 777 988 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 958 972 - -
Spst3g05078 1372 Pfam ABC transporter 1169 1309 IPR003439 GO:0005524
Spst3g05078 1372 MobiDBLite consensus disorder prediction 1045 1069 - -
Spst3g05078 1372 Gene3D - 1147 1355 IPR027417 -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 681 713 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 852 868 - -
Spst3g05078 1372 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1154 1372 IPR003439 GO:0005524
Spst3g05078 1372 MobiDBLite consensus disorder prediction 973 988 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 729 756 - -
Spst3g05078 1372 MobiDBLite consensus disorder prediction 347 369 - -
Spst3g05078 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1151 1343 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05078 Spst-Chr3 102455561 102467247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05078 1167 1321 Calmodulin-binding Proteins AT2G36910 25.731 3.92e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05078 - - var:108329458 1516.13