Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05073 ATGGTGGAGGGAGCCCATTTTCCTGCAGGTTTGCGTGTACTTGCCGTTGACGACGACCGAGCCTGTCTCACAGTGTTGGAGAATCTGCTTCGAAAATGCCAGTACCATGTTACTACGACTACTCAAGCAGTCCAGGCGCTAGAAATGCTGAGGAAAAACAGAAATAAGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGAAATGGATGGGTTTAAGCTGCTTCAGCATGTTGAACATGAGACGGACCTACCCTTTATCATGTTGTCAGGATACGGTGATAAAGAGCGGGTGATGAAAGGTGTTGAATATGGCGCTTGTGACTTTTTAACTAAACCGGTTCGAATTCAAGAGTTACAGAACATATGGCAACATGTAGTGCGAAGGAAGATTGATAGCAAGGATAAGAATAAGACTGAAAATGATCAAATAAACTGCAGTTTGGCTGGTAAGTTTGCAACTGAAGAGAAAGGATGCACCATTGCTGGGGAATGTAGCAAAGCCTTGGCAACAAAAACTAATGCTAACCAGAATATAAAAGTGGATCAAAAAAGGAAAGAACGCTGTGAGGCTGAGGAAGGAGAAGAAGATGACAAAGAGAACGATGAACCCTCAAATCAGAAGAAACCTCGTTTAGTTTGGGATGCCGAGTTGCATAGCAAATTTCTTTCTGCCATTGATCAGCTGGGAATTGACAAGGCTTTCCCCAAGAAAATACTTGACTTGATGAATATTGAAGGACTTTCAAGAGAAAACGTAGCAAGCCATCTCCAGAAATTCAGACTCGGTCTCAAAAAGCCTAATCAACGTGCTAGCATGGTTCCTACGTTGTTGGGTACTAGTGATCCTTACCACCGAATGGGTTCACTAGATTGCTTTCGCACTTCATCTGGACCAGGAACAATGTTAAGCAACACAGTACCATCGTATAGATATGGTCCTGGTGGTTTGTACGCGACAGGAATGAACTCATCTCCACTTGTTCAGGCTGCTCAGTCTCGAAACATTAATAGCAGTTCCATAAAAACACATGGAAACATGCACACGTCCATATTTTCTGGAAATCAAAGCTCAAGCTTATTGCAGGGCATTCCAACCCCAATCGAGGCTAATCAATTCCAGCAGAACAACAGTATAGCTTGTTTTAGGAGGTTGAATCTACTTGATGATTCGATTGGATTTAAAGATTCCTCTAGTTTCTGGGGCAATAGAGTCACTGTTAGGAATGCAGCAAATAATTCTCTACCTAGTCTCTCCAATAATCATCTACATTTTCAAGCAATTTCCACACTAGCACATCATTCGGAAGCATTCAGAAATCACTCTTCTTTTGGAGCTGCTGCTGTTAACACACAATCTTTTGATCCTAATTCCTGTGGTTCGTCTAAAATGATGGATGATTATAATAATAAAAGCTGGCAGGGAGCAGCTCAGATATCTAACTTTCCTTCCAATACTTCAGCAGTCGGTAAGGTTTTCAACAACGATCAACTGCTTCAGCATAACTTAAAATTTTCCTCATCCACTTTTAGCAGTAGGAACAGTCCAGTTGGATTTTCTTCCGCTGTTCCTTCGGAGGATGATGTCCTAGGCGAGGTGCTACGCGAAGAAGGCTTACTTGGGAATGTCTTACTAGCTTCAAGCTACAAGGGAGGATACAGCAAACATACAAGTCAAACCTTCAATTCCATGAATGCTGTCATTTCTCCTAACGGAGGCACAAGTTCCTTGGGAAATAGTTTTGACCAAAATAATGCAGTTGACAACAAGAGAATTGATGCATCTTTGGTTGGCCAAATGAATGGGGTTAATCCATCAATCACACAATGTGGTGAAGGTGAGAATTTCTATTCAATGAAATCAAATGATGCCTACGTTTTGCAGAGCATGAAGTCTGGTGAAGGACTCGTGCAGAATACTTTTGACTCCTTGGATGACATAATGAATGAAATAGACAAACAGGCTGACGTGTTTCAAAATTTTCATTATGAACAAATATGTTCGGATAGTTCTGTGAGTAGCAATGGTATCAACGAATAA 2040 0.4132 MVEGAHFPAGLRVLAVDDDRACLTVLENLLRKCQYHVTTTTQAVQALEMLRKNRNKFDLVISDVNMPEMDGFKLLQHVEHETDLPFIMLSGYGDKERVMKGVEYGACDFLTKPVRIQELQNIWQHVVRRKIDSKDKNKTENDQINCSLAGKFATEEKGCTIAGECSKALATKTNANQNIKVDQKRKERCEAEEGEEDDKENDEPSNQKKPRLVWDAELHSKFLSAIDQLGIDKAFPKKILDLMNIEGLSRENVASHLQKFRLGLKKPNQRASMVPTLLGTSDPYHRMGSLDCFRTSSGPGTMLSNTVPSYRYGPGGLYATGMNSSPLVQAAQSRNINSSSIKTHGNMHTSIFSGNQSSSLLQGIPTPIEANQFQQNNSIACFRRLNLLDDSIGFKDSSSFWGNRVTVRNAANNSLPSLSNNHLHFQAISTLAHHSEAFRNHSSFGAAAVNTQSFDPNSCGSSKMMDDYNNKSWQGAAQISNFPSNTSAVGKVFNNDQLLQHNLKFSSSTFSSRNSPVGFSSAVPSEDDVLGEVLREEGLLGNVLLASSYKGGYSKHTSQTFNSMNAVISPNGGTSSLGNSFDQNNAVDNKRIDASLVGQMNGVNPSITQCGEGENFYSMKSNDAYVLQSMKSGEGLVQNTFDSLDDIMNEIDKQADVFQNFHYEQICSDSSVSSNGINE 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05073 679 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Spst3g05073 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 333 IPR045279 GO:0009736
Spst3g05073 679 Gene3D - 11 208 - -
Spst3g05073 679 FunFam Two-component response regulator 205 267 - -
Spst3g05073 679 MobiDBLite consensus disorder prediction 179 211 - -
Spst3g05073 679 Gene3D - 209 266 - -
Spst3g05073 679 Coils Coil 172 192 - -
Spst3g05073 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Spst3g05073 679 SUPERFAMILY CheY-like 10 134 IPR011006 -
Spst3g05073 679 PIRSF RR_ARR_type-B 2 677 IPR017053 GO:0003677|GO:0003700|GO:0009736
Spst3g05073 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Spst3g05073 679 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Spst3g05073 679 SMART REC_2 11 123 IPR001789 GO:0000160
Spst3g05073 679 CDD REC_typeB_ARR-like 13 127 - -
Spst3g05073 679 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05073 Spst-Chr3 102435991 102440655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05073 7 377 Response Regulator Gene Family AT2G25180 45.974 1.30e-90 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g05073 Response_reg 3.3e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05073 K14491 - vun:114177568 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05073 3 102435991 102440655 Spst3g05073 3 102435991 102440655 ECH