Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05060 ATGGCGCCACAGAAACTCACCGATTACGAACTCAAGCGACTCGACAACATTCGCCGCAACGATGAGATTATGGCTGCCCTCAAAATTCATTCCAAAGCTGCCCAACTCTCCAATTTCAAGCGTCAAAGAGGTGAAACCAAACCTATAGGCGTGAAATTGGAAAAGAAACCCAAAACCGAAACCCCAATTGTCATCAAAGTCAGACGCTCTCTGCGAACCAGGGGTATTCCACCAGATTGCGAAGGTGTCGAGGGAGATTCGGTGGACCCCATCACTTCCTCCAAAGAAGAACAACCTTTGGGTCCTCTTTCCATGGCCGATGCTCGTGAAAGCGATCACTCTGATAGTTCCTTCGTCGAATCGCTAATGGGTATGGCTCAAAATGAGGCACAAGATGGTAGTGTTCAAAAAGGGAAAGTGGGGCATTCCCTTGAGTTGGAATCTCTGTCTTTGGATCCCGAGAATATTGCGCGGGTTGTTTCTGGAAAGATTACCAGTGTGAAGTTTTTCCCTTCCAGTAGTGTCAAAATGATTGCCGCGGGTAGCAAGTTTGGGAATATTGGATTTTGGAATATGGGAGAAAATGAGGTTCATTTGTACCGTCCCCATCAGGCTCCCATTTCTGGGATATTGATTCAACCACATTGCTATTCCAAGATATATACAAGTTGTTACGATGGAGTTCTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTGGTGTTTGAGATTGACGAAAAAATATATGCTCTTTCCCAACCAACAAATGAAACAAACTGCCTATATCTTGCTGAGGGTTTTGGAGGTTTGACTATTTGGGATAACAGGATGGGAAAACGTTCGTCTCACTGGGATTTGCATGAAAGTAGGATTAACACGATAGATTTCAACTGTCAAAACCCTCATATTGTAGCTACTAGTTCCTCTGATGCAACTGCCTGCACCTGGGATTTGAGATATACTGATAAGGATAAGCTCATAGCCCTGAGCACATTTACCCACAAAAGATCTGTCCAATCTGCCTACTTCTCTCCTTCTGGATGTAGCCTGGCAACTACAAGCTTCGACAACACGATTGGTATTTACAGTGGAGTTAACTTGGAGGATGCGGCTGTTATTTCTCATTTCAATCAGACTGGCAGATGGCTTTCTACGTTCAGAGCGAAATGGGGTTGGGATGACAGATATCTCTTCGTTGGAAATATGAATAGAGGGGTTGATGTGGTTTCAGCCGTTCAAAGGAAAATAGTTATGACTCTAGAGAGCCAACACGTGTCTGCCATTCCTTGCAGATTCGATACACACCCTTACGAGGTTGGGATGCTTGTAGGAGCAACAAGTGGAGGCCAGGTTTATATCTGGACATCGCGCTAG 1377 0.4481 MAPQKLTDYELKRLDNIRRNDEIMAALKIHSKAAQLSNFKRQRGETKPIGVKLEKKPKTETPIVIKVRRSLRTRGIPPDCEGVEGDSVDPITSSKEEQPLGPLSMADARESDHSDSSFVESLMGMAQNEAQDGSVQKGKVGHSLELESLSLDPENIARVVSGKITSVKFFPSSSVKMIAAGSKFGNIGFWNMGENEVHLYRPHQAPISGILIQPHCYSKIYTSCYDGVLRLMDAEKEIFDLVFEIDEKIYALSQPTNETNCLYLAEGFGGLTIWDNRMGKRSSHWDLHESRINTIDFNCQNPHIVATSSSDATACTWDLRYTDKDKLIALSTFTHKRSVQSAYFSPSGCSLATTSFDNTIGIYSGVNLEDAAVISHFNQTGRWLSTFRAKWGWDDRYLFVGNMNRGVDVVSAVQRKIVMTLESQHVSAIPCRFDTHPYEVGMLVGATSGGQVYIWTSR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05060 458 SMART WD40_4 326 364 IPR001680 GO:0005515
Spst3g05060 458 SMART WD40_4 414 456 IPR001680 GO:0005515
Spst3g05060 458 SMART WD40_4 278 318 IPR001680 GO:0005515
Spst3g05060 458 SMART WD40_4 150 191 IPR001680 GO:0005515
Spst3g05060 458 SMART WD40_4 193 233 IPR001680 GO:0005515
Spst3g05060 458 MobiDBLite consensus disorder prediction 75 117 - -
Spst3g05060 458 Gene3D - 155 458 IPR015943 GO:0005515
Spst3g05060 458 FunFam WD repeat-containing protein 76 155 457 - -
Spst3g05060 458 ProSitePatterns Trp-Asp (WD) repeats signature. 305 319 IPR019775 -
Spst3g05060 458 PANTHER UNCHARACTERIZED 4 457 - -
Spst3g05060 458 SUPERFAMILY WD40 repeat-like 148 455 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05060 161 409 U-box Gene Family AT1G04510 24.627 1.00e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05060 K24755 - gmx:100800122 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05060 3 102321495 102323914 Spst3g05060 3 102321495 102323914 ECH