Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05056 ATGCTGGACGGAGAATCCTCTGTCTTGGCCGGCGGTCAACCGACCATGGACTCCTCTTTAAGCCTCTCTGGTCAACCACTATCCCTTGGTCTTTCCCAAGTTAAACATCATGATGACTCAACCAAGAAAGATCCCCGCAAAATTGCTAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGACGAAAATATAATTGTATGTTTGGGGACAGGGTGTGGGAAGACCCACATAGCTGTGCTTCTTATGCATGAGATGAGTAATTTGATTTCGAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACAGTGGCTTTAGTTCATCAGGTTTGGACAAAAGTTATAGCAGACTCTACTGATTTTAAGGTTGGAACTTTCTGTGGAAGTTCCAAGCGCTTGAAAGGTCATCAAGACTGGAAGCAGGAGATTGAACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTCCACAACTTATCTCATTGTTTCATCACGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAATTTTCTACAAAAGTAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCATCCCCTGTGGTTGGGAAAGGTAACATGACAATTCTTATTTTCAAAAAGTTGAGTGCTAACAAGAGCCAGGTTATTTGTTTGCCTCAATTGCCTTTCAATATTGTTGAATTACAGGATTTAGGTGCTTCTAGTGAAGAAAATCTAGCAAAAAGCATCAATAGTCTTGAACATATTCTTGATGCAAAGTGTTTGCATGGGGCTAAGATTTATGGAAATGTAGTATTTGGGATCCATACAAAGATATTGGTGCTGAGCTCTGCTGAATTCTTTGTATACACTGTTGACGACAATGAATTGCAATCTTGTGTGACCACTCCGGTGATTAATATATATCATTATGCTTCAACTACAAGGGCGGAAACTAGCTTGTACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAACAACCCTTGGTAGGAGTATAGAAGATCACCAAAAACGGATGAATACAAAGAAACTCCTGAGCCGGATGCATGATAACGTGGTTTTCTGTCTAAGGAATCTTGGCATTTTGGGAGCACTTCAAGCTAGTCATATTCTTCTGAGTGGTGATCATTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTCTGTGTGATAAATATCTTTCTCAGGTTGCTGAACTATTGACATCACAAATTGTGACTGCAAGATCCCTGTCATATATACTCCAGAAGCTAAAGCTTCTAAGACAATGGAGAAGTGATTATCTAGTAGGAGTACATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAGCATCATTGTTGATAAGTTTCGCACTGGAGTGTTGAATTTGTTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACGTGTTGCCTTGTCATACGATTTGATCTTCCGGAAACCGTTGCTAGCTTTATACAGTCAAGAGGCCGTGCACGTGTGCCTCAGTCTGAATATGCTTTTTTGGTGGACAGTGCCAATAAGAAGGAGCTTGACATAATTGAAGGTTTTGAGAAAGATGAACACCGAATGAATATGGAAATTACTTCTCGAACATCTGATGAGACATATATCATCCCTGAGGAAAGAATTTTCAGAGTTGATTCGTCCGGTGCTTCTGTTAGTTCTGGATGTAGTGTCTCATTGCTTCACCAGTATTGTTCCAAGCTTCCACATGATGAGTATGAACCAAATTATATACTCAACTAA 1845 0.4011 MLDGESSVLAGGQPTMDSSLSLSGQPLSLGLSQVKHHDDSTKKDPRKIARKYQLELCKKAMDENIIVCLGTGCGKTHIAVLLMHEMSNLISKPQKNICVFLAPTVALVHQVWTKVIADSTDFKVGTFCGSSKRLKGHQDWKQEIEQYEVLVMTPQILLHNLSHCFITMEMIALLIFDECHHAQVKSNHAYAVIMKIFYKSNSTKVPRIFGMTASPVVGKGNMTILIFKKLSANKSQVICLPQLPFNIVELQDLGASSEENLAKSINSLEHILDAKCLHGAKIYGNVVFGIHTKILVLSSAEFFVYTVDDNELQSCVTTPVINIYHYASTTRAETSLYLKIEEIKRQCITTLGRSIEDHQKRMNTKKLLSRMHDNVVFCLRNLGILGALQASHILLSGDHSERHELVEAEGNSSDDSLCDKYLSQVAELLTSQIVTARSLSYILQKLKLLRQWRSDYLVGVHAGLKSMSRKTMSIIVDKFRTGVLNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARVPQSEYAFLVDSANKKELDIIEGFEKDEHRMNMEITSRTSDETYIIPEERIFRVDSSGASVSSGCSVSLLHQYCSKLPHDEYEPNYILN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05056 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 233 IPR014001 -
Spst3g05056 614 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g05056 614 CDD DEXHc_dicer 47 242 - -
Spst3g05056 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 421 564 IPR001650 -
Spst3g05056 614 SMART ultradead3 45 248 IPR014001 -
Spst3g05056 614 SMART helicmild6 437 527 IPR001650 -
Spst3g05056 614 PANTHER DICER-RELATED 63 607 - -
Spst3g05056 614 Pfam DEAD/DEAH box helicase 51 213 IPR011545 GO:0003676|GO:0005524
Spst3g05056 614 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 591 614 IPR005034 GO:0016891
Spst3g05056 614 Pfam Helicase conserved C-terminal domain 446 525 IPR001650 -
Spst3g05056 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 539 IPR027417 -
Spst3g05056 614 Gene3D - 428 562 IPR027417 -
Spst3g05056 614 Gene3D - 49 294 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05056 Spst-Chr3 102295801 102302289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05056 415 558 Eukaryotic Initiation Factors Gene Family AT3G19760 30.719 6.90e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05056 K11592 - gmx:100797277 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05056 3 102295801 102302289 Spst3g05056 3 102295801 102302289 ECH