Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05046 ATGGCTTTCCACGACCATCTCCAACACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGCTGAGCGAGGGTAGAGACATGCAGCAGAGGCTCCCATCGACATGGCTGAACAACTTGAACGCGGCGCAGCAGCGGCAGCAGAATTTCCTCGACAGCGCCGCCGAGAAAAGCGCGGATCGGAACCGGAGCGAAAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAGGCGGACATTCTAGGGCACCCTCTCTACGATCAACTGTTATCGGCGCATGTGTCATGTCTCAGGATTGCCACGCCAGTCGACCAGCTTCCCAGGATTGACGCCCAGCTTCAGCAGTCGCAGCGCGTGGTGGAAAAGTACTCTGCACTCGCCAATAACAGCGCAGTCGATGAGAAGGAGCTTGATCAATTCATGTTCTTGAATTCTTATGGAATATGTTCTGAGCCACAGTTGAAGCTCTCGTCAAGTTTTCTCAACCTTTACTTCCTCATTAATACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACTGAGTTCAGCCAAATACCCATAGGTGTGTCTCCTGGAGAAGGAACGGGAGCAACAATGTCAGACGATGAAGATGATCAGGCAGAGAGCAATGGTAACTTGTACGAAGGCAGCTTCGACGGCGGCGAAACCCTTGGCTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGATCCTTGATGGAGCGAGTCAGGCATGAATTGAAGCATGAACTAAAACAGTTAGAGTAG 849 0.51 MAFHDHLQHEIAFQRFTEEQELSEGRDMQQRLPSTWLNNLNAAQQRQQNFLDSAAEKSADRNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALANNSAVDEKELDQFMFLNSYGICSEPQLKLSSSFLNLYFLINTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTEFSQIPIGVSPGEGTGATMSDDEDDQAESNGNLYEGSFDGGETLGFGPLVPTETERSLMERVRHELKHELKQLE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05046 282 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Spst3g05046 282 MobiDBLite consensus disorder prediction 218 258 - -
Spst3g05046 282 SMART KNOX2_2 127 209 IPR005541 GO:0003677|GO:0005634
Spst3g05046 282 Pfam KNOX1 domain 76 117 IPR005540 GO:0003677|GO:0005634
Spst3g05046 282 Pfam KNOX2 domain 170 208 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05046 Spst-Chr3 102224358 102229211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05046 76 280 Homeobox Transcription Factor Family AT5G25220 65.865 4.87e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05046 - - gmx:100803673 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05046 3 102224358 102229211 Spst3g05046 3 102224358 102229211 ECH
Spst3g05046 3 102224358 102229211 Spst9g02652 9 60594539 60599389 PCT