Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05045 ATGGCAGAAGTTGGATCAGTTGAAGCTGATTTCTTTCTCTTTCAGGGTTACAAGGAGAAGATTGTGGATATAAGAGAAGAAATTCTGCGAAAGAGACGAGCAGGGAAGCTTCCAGGGGACACCACATCTCTTTTGAAAGCTTGGTGGCAAGCACACTCTAAATGGCCATACCCCACTGAGGAAGACAAAGCTAGACTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAATAACCCCTCATCCTCTAATAACACCAAAAGCAAGCGCAAGAGCTTTCTCTATGAGAGGCATGGAAGTTGCAAGAGAGAGAGGGGACAGCTTCCTTCCGATTGCCTTCTTACCACAAAAGGAATTGCGAATGAAAAGAAGGATTTGGCAGACGTAAAGCAAAGGAAAAGTATAGATTATTTTGAACGCCTCCTCAAAGGAACGCGTTTACTTTGA 489 0.4274 MAEVGSVEADFFLFQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSNNTKSKRKSFLYERHGSCKRERGQLPSDCLLTTKGIANEKKDLADVKQRKSIDYFERLLKGTRLL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05045 162 SUPERFAMILY Homeodomain-like 30 95 IPR009057 -
Spst3g05045 162 Gene3D - 29 91 - -
Spst3g05045 162 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 100 - -
Spst3g05045 162 SMART HOX_1 30 95 IPR001356 GO:0003677
Spst3g05045 162 CDD homeodomain 31 92 IPR001356 GO:0003677
Spst3g05045 162 ProSiteProfiles 'Homeobox' domain profile. 28 91 IPR001356 GO:0003677
Spst3g05045 162 FunFam homeobox protein knotted-1-like 3 isoform X1 29 90 - -
Spst3g05045 162 Pfam Homeobox KN domain 48 87 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05045 Spst-Chr3 102221336 102223939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05045 13 113 Homeobox Transcription Factor Family AT5G11060 84.158 1.22e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Spst3g05045 Homeobox_KN 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05045 - - gmx:100803673 180.644