Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05037 ATGGGTTCCTCTTCTAGTAGACTTGCCTCTCGCCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTCACAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCGGGTTGGTTTAGCAAGAGATTTTGATGGTGAAATTCAGAAAGTCAATGAGGAATCATCTTTATCATGTATAGAATCTAGAATAAGCTGCAGTCCCCCTGCTGAAACTTCAAACTCATCTGATATGAGAACCCAGTTCCATGGCAATACTAGTGCTGGATGTTCTTATAGAAACTTTGCAACAAATAGTCAGTGGAACTTCTTGTCTGAACATGAGGAGCAAGCCCCTCCTTATCGGGTAAGTGCTGGTCATAGTGATCATGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAATCAATGATGTTAATAATCCAGTGGTTAGTGGTGTCTCTCAAGTCTCTCATGAGACAGTGCATCCAAGAAGTTCAACCCCTCAGGAGCATGTGAATTTCAGTTCTGGGGAAATTTCTCTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCTTCCAACCCTATTACTCAAGGTTCCAACTCAGCAGCAACTTCTCAAGGGCCAGAAGAAGAACCTTGTCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGACCGGGAAATGATAGTGTGCTTCAAGTTGACGTGGTCACAATATCTTCCAACATTTTGTCTGGAACCAATGATGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCAAGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACAATTGTCTTCTCTACCGGAGGTGCTGATGATCTTGGATCTCAAGATCGATGGCTAGTTGATTTTGGTGGTGATTTGTCAAATGATGGGATTGGAGGTGCTTCTGCATACATGGGCAGTAGAATTCACAGATTGAACGAACGAAGAATGCGGCACTCTAGATCTGAGATCTGGGATAGGCTTCGAGGTGGCTTTGATGAGATTGGTCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGCGAGTCTTCCCCTATGGCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAAGCTTTGTTTGAGGTTTTAGATGAAATCCATAGGCAACCTGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTCCCCCTGAAATCTCACAAAAAGGTTGATGTGGCTGATGGAGGCAATGATGCTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAGGGGGACCAAATACGAGTTCTTCCTTGCTTCCATGAGTATCACATGTCATGTGTGGACAAGTGGCTCAAAGAAATACACGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTTCCAACTCAGAAGTGCAGTCTCATTGA 1638 0.4383 MGSSSSRLASRPSSSSSSSSSSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELRVGLARDFDGEIQKVNEESSLSCIESRISCSPPAETSNSSDMRTQFHGNTSAGCSYRNFATNSQWNFLSEHEEQAPPYRVSAGHSDHESYSDSSNTASTSFVAQQSSDPVSVNVSANKDVINDVNNPVVSGVSQVSHETVHPRSSTPQEHVNFSSGEISLENHTSAFISIQNSSNPITQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGTNDDANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDLGSQDRWLVDFGGDLSNDGIGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVDVADGGNDAEQCYICLAEYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSSNSEVQSH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05037 545 MobiDBLite consensus disorder prediction 226 252 - -
Spst3g05037 545 MobiDBLite consensus disorder prediction 130 160 - -
Spst3g05037 545 ProSiteProfiles Zinc finger RING-type profile. 484 526 IPR001841 -
Spst3g05037 545 SMART ring_2 484 525 IPR001841 -
Spst3g05037 545 FunFam Putative RING zinc finger domain superfamily protein 451 531 - -
Spst3g05037 545 MobiDBLite consensus disorder prediction 141 160 - -
Spst3g05037 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 530 IPR013083 -
Spst3g05037 545 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 544 - -
Spst3g05037 545 MobiDBLite consensus disorder prediction 1 25 - -
Spst3g05037 545 MobiDBLite consensus disorder prediction 226 243 - -
Spst3g05037 545 SUPERFAMILY RING/U-box 470 529 - -
Spst3g05037 545 Pfam Ring finger domain 483 526 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05037 Spst-Chr3 102161446 102164887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05037 359 530 C3H Transcription Factor Family AT5G45290 47.396 5.34e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05037 - - gmx:100783604 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05037 3 102161446 102164887 Spst3g05037 3 102161446 102164887 ECH