Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05035 ATGGCCGAACAAACCGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTCAGCTCGAAGAAAACTGGTAAGGGGAAGAGACCTGGTAAAGGTGGAAACCGCTTTTGGAAATCCATTGGTCTTGGATTTAAGACTCCTAGGGAAGCAATCGAAGGAACCTACATTGATAAGAAATGCCCTTTCACTGGCAATGTCTCCATCCGGGGTCGTATTCTAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACTATTATTGTTAGGAGGAATTATCTCCATTTTATTAAGAAGTATCAGAGGTACGAGAAGAGACACTCAAATATTGCTGCCCACATATCACCTTGTTTCCGTGTGAAGGAAGGAGATCACGTCATTATTGGTCAATGCAGGCCTCTCTCTAAGACAGTGAGGTTCAATGTATTGAAAGTGATCCCTGCCGGATCTTCTAGTGGTGCAAAGAAGGCATTTTCTGGAATTGCAAAAGGGTTCCCTCCTTTTGGTATGCTTGACTTGACCATAAAGACTTACATGCATGACCTTGTTGGAATCCATGATAATAAACAATTGCCAGTTGCTGAGTTGAACTTGCCACTTGGCCACAACTGCTGTGTTGACACCATGTGTGTGCAAGAGGGTGAACAAGTTGGTGAGGATATAGAGAAGAACGTTGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCACATGGATAACAGGGAAAAAGACTCTTCCTTTAGATGTCCCACTGACCAGATCAGTGTTGCAAATTCATTTCCTCTCGAAAGCATATGTGAGGATACAGAAATTGGGGACAAAAAACAAAACCTGATGAACTTTGTTCCTACTCTTCGGTCTGGAGAGTGGTGTGATATTGGAGAGCGCCCTTCCATGGAGGATACCCACATAAGCATTGGAGACTTGGCCCAAAAATTTGGCAATAATGTACTCTGTGAGGAAGCTATTTCCTTTTATGGTGTATTTGACGGACACGGAGGGAAGAGTGCTGCACAATTCGTCCGTGATCACCTGCCACGGGTGATTGTTGAGGATGCTGACTTTCCTTTGGAACTTGAGAAGGTTGTCACAAGGTCCTTTTTGGAGACTGATGCAGAGTTTGCGAGATCATGTTCAATTGAGTCTTCGTTGTCTTCTGGCACAACTGCGCTGACTGCAATTATATTTGGAAGGTCGTTACTGGTAGCCAATGCTGGAGACTGCCGTGCCGTGTTATCACGTGGTGGACGGGCAATAGAAATGTCCAAAGATCACAGGCCGTTGTGCATTAAAGAAAGGATGAGGGTTGAGTCTGCAGGTGGATACATAGATGATGGTTATCTGAATGGGCAGTTAGGTGTGACTCGTGCTCTAGGCGACTGGCATATTGAAGGAATGAAGGAAAAGAATGGAAAGGATGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATCATTGGCAGCGATGGAATCTGGGATGTTTTTCGCAGCCAGAACGCAGTGGACTTTGCTCGAAGGAGGCTTCAAGAACACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGAGAAGCAATAAAGAGAGAAGCAACGGACAACTTGACAGTGGTGGTGGTATGTTTTCAGTCAGAACCACCACCTCCTGTAGTTGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGGCTTCAAAATCTTAAATGCTTGCTACAAGGATAG 1767 0.4454 MAEQTEKAFLKQPKVFLSSKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFSGIAKGFPPFGMLDLTIKTYMHDLVGIHDNKQLPVAELNLPLGHNCCVDTMCVQEGEQVGEDIEKNVVDNRRVSWPLHCDLLHAHMDNREKDSSFRCPTDQISVANSFPLESICEDTEIGDKKQNLMNFVPTLRSGEWCDIGERPSMEDTHISIGDLAQKFGNNVLCEEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGRAIEMSKDHRPLCIKERMRVESAGGYIDDGYLNGQLGVTRALGDWHIEGMKEKNGKDGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKREATDNLTVVVVCFQSEPPPPVVVERPRVRRSISAEGLQNLKCLLQG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05035 588 ProSiteProfiles PPM-type phosphatase domain profile. 290 555 IPR001932 -
Spst3g05035 588 NCBIfam 30S ribosomal protein S17 55 143 IPR028333 -
Spst3g05035 588 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Spst3g05035 588 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Spst3g05035 588 Gene3D - 273 559 IPR036457 -
Spst3g05035 588 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 152 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst3g05035 588 Pfam Protein phosphatase 2C 300 547 IPR001932 -
Spst3g05035 588 Gene3D - 1 158 - -
Spst3g05035 588 CDD PP2Cc 290 555 IPR001932 -
Spst3g05035 588 FunFam Probable protein phosphatase 2C 22 273 558 - -
Spst3g05035 588 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Spst3g05035 588 ProSitePatterns PPM-type phosphatase domain signature. 329 337 IPR000222 GO:0043169
Spst3g05035 588 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst3g05035 588 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst3g05035 588 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst3g05035 588 SMART PP2C_4 280 553 IPR001932 -
Spst3g05035 588 FunFam 40S ribosomal protein S11 1 158 - -
Spst3g05035 588 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst3g05035 588 SUPERFAMILY PP2C-like 283 556 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05035 Spst-Chr3 102140123 102150380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05035 258 588 PP2C-type Phosphatase Gene Family AT2G25620 59.403 8.14e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Spst3g05035 PP2C 1.3e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05035 K14803 - gmx:100782648 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05035 3 102140123 102150380 Spst3g05035 3 102140123 102150380 ECH