Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05034 ATGCCCGACACTCCTCCAATGGCCATCACATTGTGCCTGGTCAATGCAGCGTGTTTTGTGGCGAACAACAGTTGGAGTAGCCTATTACACCACCTCCTCTTTTGTGATCTCTGTCCTCTCTCTCTCTTTGCCAAGGTGTCTGTGTTCTTCTCTCCTCCATTTGCAGTTGAATCTTCTAAGGAGGAGGCAGTGCATAGATGCCAGATCGATAACTATGCTTATAGGATGGTCTTCTATTTCCAACCTAATGGGGTTGATGGAGGAGTATCGGTTGGGGCTATGTCGGTGAAGGGTTGGGGCTGCATCACCGGTCACAGAATGGGAAGCAATGTTGCCGAAAAGATCCCAATCGCTGAAAGTTCAGAAACCACTATTGAGATAAAGATTAAAACATTGGATTCTCAAACATACACCCTCAGAGTGGATAAACAGATGCCAGTCCCCGCCCTAAAAGAACAAATTGCTTCTGTAACTGGAGTATTATCTGAACGACAGCGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGACCAGCTCCTGTCTGCATATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGCCCAATCATTCAGTGACTGAAACGAATTCAAGCACAAGCCTTGGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGCTCAGGGTGATGGAATTCATCCTGAAATCAATAGGATTGTTTCTGCTGTTCTAGGATCCATTGGAATTACAAATTTTTCTAGTGTTGCTGAAGGGATTGATGTCAGGGAGAATGATTCCCAAGGCCCAGGAAGAACTTCAGGCTCTAATGGAATATTTGATTCATCTCATCCTCAACCCGAACAAACTGGTTTTCGGATTTTGTCTGATAGATCACGCACCACTTTTGGAGCTCCTGTGCCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTAACAACTTTGTCCCAATATTTAAGTCACATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGGGGATATTGCCCAAGCAGCTGAGGCTCAAAGGAATGTAGAAACTAGATCCGTTTCTTCTAATTTGGGTTCCACTCCAGATGGACTTTCATCTCCCACATTCTTGGCAGAAGTTTTACTTTCTACCAGACGAATGATTGTTGAACAAGCTGGCGAATGCCTACTTCAACTATCAAGGCAGCTGGAGAATCAAGCAGATGTAACTGATCCGTTGTTGCGGTCAAGCATTCAGTCTAGGGCATTGAGAACTGGAGTTTTGTTTTATAACCTGGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACACTGTCTGAAGCTGTGGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAAGCTGGAACAAGCTTTGGCACTGTCCCTGTTGGAGCTCCACAGTCTAGCTCAAGTTTAGGTAGTGGGCTTGGTTCAAGCTTTTTCCCTAGGCGTATAGATATACAGATACGACGAGGTACCTCATCAACATTGTCCAATACCAATCAAGAAGAACGCAGTGATACACAATCTGTCTTAGTACAAAGAAATCCAGGTGATAATCCTGTTAATCAAGCAACCTCTAGGCGTCCAGATGCATCATTTCCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCAGCAGTGCCAGGTCCTGTAGGGCGTCCACCTTCAGAGTCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTATCTTCTGGACATGCAAATAGTGAACAGGGATCTCAACAATCAACTCAGCATCAGGCGGCAGTGCCATCAACCACTGAATCCATGTTGCAAAGGCAAAATACAGATGATTCTGCAAGGAATGGATCCTTATCAACTCCAAACACAAGACAAGAGCCATCTAATTCACGTGTTGTAAATATCAATATTCTGGCTGCTAGTGGACCCCAAAACAACCAAGAATCTGACAGACAAATTCCAAGCAGTGTTCTTCAGATCTTAAGGACACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAGGTGTACAAGGAACAACTGCGGGTTCTACCTCAGATCATGCTGCAACATCAAGGGCTGCTGCCCAAGTCCCTGAAGCACAACCTAGTGTCAGTGAAGAAGGAATATTTTTTTCTAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCTGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGATTCTTCAACCCAGGTTGAAACTGACGTTGGGACATCACGCAGACCGAGCGATTCTGATTCAAGTCCCCCAAGTCCAAAACGTCAAAAGGTTTCTCTTCCACTTTTGAGGATTCTCTGCTCCCATGACCATGTGCCCGCTATTCTCTGTCCAAGTGGGATCCTGTTAGATCATATTCCCAGTACTCTTTATAGGGGAGGAAAAAGTAATCGATTGGGTTGTCAGGCTCAACCTGATGATTAG 2607 0.4469 MPDTPPMAITLCLVNAACFVANNSWSSLLHHLLFCDLCPLSLFAKVSVFFSPPFAVESSKEEAVHRCQIDNYAYRMVFYFQPNGVDGGVSVGAMSVKGWGCITGHRMGSNVAEKIPIAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSVPNHSVTETNSSTSLGHSSQVAPGVFIETFNVPAQGDGIHPEINRIVSAVLGSIGITNFSSVAEGIDVRENDSQGPGRTSGSNGIFDSSHPQPEQTGFRILSDRSRTTFGAPVPVSLGSLQPPVIPDSLTTLSQYLSHISHEFDAIVREGGDIAQAAEAQRNVETRSVSSNLGSTPDGLSSPTFLAEVLLSTRRMIVEQAGECLLQLSRQLENQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTLSEAVVNGGPAVFISPNGPNHIMVQPLPFQAGTSFGTVPVGAPQSSSSLGSGLGSSFFPRRIDIQIRRGTSSTLSNTNQEERSDTQSVLVQRNPGDNPVNQATSRRPDASFPGEPGVRLVPIRTMVAAAVPGPVGRPPSESSGNSIGLYYPILGRFQHVSSGHANSEQGSQQSTQHQAAVPSTTESMLQRQNTDDSARNGSLSTPNTRQEPSNSRVVNINILAASGPQNNQESDRQIPSSVLQILRTLFPGGEIHVEDSGVQGTTAGSTSDHAATSRAAAQVPEAQPSVSEEGIFFSNMLREIMPVISQQVGSEGNPSEDHMAQDSSTQVETDVGTSRRPSDSDSSPPSPKRQKVSLPLLRILCSHDHVPAILCPSGILLDHIPSTLYRGGKSNRLGCQAQPDD 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05034 868 SMART ubq_7 125 196 IPR000626 GO:0005515
Spst3g05034 868 Gene3D - 118 219 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 774 818 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 532 581 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 274 308 - -
Spst3g05034 868 FunFam Large proline-rich protein BAG6 117 210 - -
Spst3g05034 868 ProSiteProfiles Ubiquitin domain profile. 125 200 IPR000626 GO:0005515
Spst3g05034 868 MobiDBLite consensus disorder prediction 532 571 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 719 753 - -
Spst3g05034 868 SUPERFAMILY Ubiquitin-like 120 205 IPR029071 -
Spst3g05034 868 MobiDBLite consensus disorder prediction 198 223 - -
Spst3g05034 868 Pfam Ubiquitin family 127 197 IPR000626 GO:0005515
Spst3g05034 868 MobiDBLite consensus disorder prediction 278 308 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 725 740 - -
Spst3g05034 868 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 118 819 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 625 678 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 774 816 - -
Spst3g05034 868 MobiDBLite consensus disorder prediction 207 223 - -
Spst3g05034 868 PRINTS Ubiquitin signature 135 155 IPR019956 -
Spst3g05034 868 PRINTS Ubiquitin signature 177 198 IPR019956 -
Spst3g05034 868 PRINTS Ubiquitin signature 156 176 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05034 Spst-Chr3 102127158 102136782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05034 125 196 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 6.47e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05034 K23390 - gmx:100783070 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05034 3 102127158 102136782 Spst3g05034 3 102127158 102136782 ECH