Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05020 ATGGGAAAGAAAACGAAGCAAGTAGAAGAAATAAGGGAGGATAGTAAAGGGGGAGATGGCAACCCCAGAGCATATGATAATGATACGATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGATGTTTCAAAAGAGGGATCTGGAAGGAGCTATATTAAAATATGAGAAAGCCCTCAAGTTGCTTCCAAGAAATCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCATGTTATATGCAGATGGGAATCAGTGAGTTGCCAAGGGCTATTCGTGAATGTGATTTGGCTCTTGAAGTGACACCGAAATATAGTAAAGCACTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTAAGAGATGTCAGTACCGTTCTGAAGATGGAGCCAAATAATGTCATGGCATTAGAGATCTCAGAAAAGGTGAAAAAAGCACTTGAGGAGAAAGGATTGAGGGTTAACGATACAATAATTGAGTTGCCACCAAATTATGTTGAACCTCCTAGTGCTTTGCCTCCAGAAAAGGTAGTGAAAGAAAACATGCGCAAGAAGAAGGGCTATAAAGAGGAAGTGAAGGCTCCTGATGACAAAATTCAAGAAAGAAAAACTGAGGAGAAATTTGAGGAGAAGAAGGCTGAGGGCAGTGTTGTGGTCGATGAGAAGAAGAACAACACGTCCAAGAAGAAGAAGGCCAAGGAAAAAATTGATGAGAAGAAGGCTGACATAAAGGAAGTTATTGAGGAAAGAAGTAATGGTAGAAGGGAACACGTTCCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGTGCTGAACTACCTATCAATTGTAGCCTCTTCAAGTTAAGAGAAGTTATTCAGGATCGATTCTCGAGCCTAGGATCTGTTCTTGTCAAATACAGGGACCAAGAAGGGGATTTAGTCACAATCACTTCTGATGATGAATTAAGACTGGCTGAAACAGGATCTAGTAGTTCTATCCGACTGCATATAGTAGAAGCAACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAATTGAAGGAGGCCGAGGTTGGCGTTGACATTGCACTTGAGAATGGTTGTGTTGGAAACGAAAATGAAATTGTTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAATTATTCAAGAAGCATGTTGGGTTTGAATCTGACAGATATTTGGACTTTCATGAACATGGGATGAAGCTCTATTCTGAGGCTCTGGAGGAGACGGTTACAAGCGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACTGCCCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAGGTATATAAAAAAGAAGATTCTTCTAAAGACCATCTATGTGAACAGATCAAAAGTTCATATAAATGGGCACTGGAAGAATATTTAAAAGCAGGAGAAAAATATGATGCAGCCACTAAAATGAAGTCAGATTTTCATGAAGGCTTCCTGGCGCTAGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCGTGGTATCATGCACTCAGTAGTAATGCAGACTTGTTGACATGGCCTTCCAATGAAGTTCTTCATCTTTACAACAATGCCGAAGAAAATATGGAGAAAGGAATGCAGATATGGGAAGAATCAAAAAATCAGAACTTGAGTAAAACATCTAATTCACATGATGTTGGATTGCATTTGCAGAACATGGGGTTGGGTGGGTTTTTTAAAAATATATCATTAGATGAACTTGCAGCACAGGAGGCACATATGAAGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCAATTGTGGAATTCAAATTAGGGCTACCTACGTGGCATGAAACTCTAGAAGTTTCAGTTGAGAAATTTGAACTTGCCGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTGCAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCAGAATGGAGTTCCATCATTTCGGTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACATATCATGCCTTTGAGCTTGCATGA 2172 0.3987 MGKKTKQVEEIREDSKGGDGNPRAYDNDTMVFISMSQELKNEGNKMFQKRDLEGAILKYEKALKLLPRNHIDVSYLRSNMAACYMQMGISELPRAIRECDLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVLKMEPNNVMALEISEKVKKALEEKGLRVNDTIIELPPNYVEPPSALPPEKVVKENMRKKKGYKEEVKAPDDKIQERKTEEKFEEKKAEGSVVVDEKKNNTSKKKKAKEKIDEKKADIKEVIEERSNGRREHVPNKTVKLIFGDDIRCAELPINCSLFKLREVIQDRFSSLGSVLVKYRDQEGDLVTITSDDELRLAETGSSSSIRLHIVEATPEQDPLFEKFKLKEAEVGVDIALENGCVGNENEIVSSSCIEDWIIQFAKLFKKHVGFESDRYLDFHEHGMKLYSEALEETVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYKKEDSSKDHLCEQIKSSYKWALEEYLKAGEKYDAATKMKSDFHEGFLALGLQQFEQAKLSWYHALSSNADLLTWPSNEVLHLYNNAEENMEKGMQIWEESKNQNLSKTSNSHDVGLHLQNMGLGGFFKNISLDELAAQEAHMKSQINLLWGTMLYERSIVEFKLGLPTWHETLEVSVEKFELAGASPTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKKWQNGVPSFRLEPLFRRRVSKTYHAFELA 723
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05020 723 SUPERFAMILY CAD & PB1 domains 269 355 - -
Spst3g05020 723 PANTHER PROTEIN CLMP1 10 721 IPR044517 -
Spst3g05020 723 SMART PB1_new 270 347 IPR000270 GO:0005515
Spst3g05020 723 CDD PB1 272 344 - -
Spst3g05020 723 SUPERFAMILY TPR-like 36 151 IPR011990 GO:0005515
Spst3g05020 723 Gene3D - 270 350 - -
Spst3g05020 723 MobiDBLite consensus disorder prediction 198 224 - -
Spst3g05020 723 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Spst3g05020 723 Gene3D Tetratricopeptide repeat domain 34 164 IPR011990 GO:0005515
Spst3g05020 723 MobiDBLite consensus disorder prediction 1 21 - -
Spst3g05020 723 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Spst3g05020 723 Pfam PB1 domain 272 346 IPR000270 GO:0005515
Spst3g05020 723 ProSiteProfiles PB1 domain profile. 270 347 IPR000270 GO:0005515
Spst3g05020 723 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g05020 723 SMART tpr_5 36 69 IPR019734 GO:0005515
Spst3g05020 723 SMART tpr_5 110 143 IPR019734 GO:0005515
Spst3g05020 723 SMART tpr_5 74 109 IPR019734 GO:0005515
Spst3g05020 723 Coils Coil 232 266 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst3g05020 Spst-Chr3 102024917 102027203 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05020 24 143 Calmodulin-binding Proteins AT3G25230 30.597 3.86e-07 51.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05020 K26538 - gmx:100778972 1220.68
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05020 3 102024917 102027203 Spst3g05020 3 102024917 102027203 ECH
Spst3g05020 3 102024917 102027203 Spst9g02683 9 60909119 60911400 PCT