Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04999 ATGCCACTTGGTTGTTATCTTCCATATACTCGCACACTTGTTGGGGTCAAACTCTCAAGCTTCACACTTCACTCTCTACCTTTTAACACATTCACTTCCCACCTTGTCCCTGCCATGTCCACAAACCAACCCGGCAATGGAGACTCCGAAACTCCCCTTCGTCAACCTCTGTTGTCTTCCCAGAGATCCATCGTTAATTCCACCTCCCAGGTTGCTATTGTGGGCGTCAATGTTTGCCCAATTGAGAGCCTCGACTATGAAATTTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGACGGCTCAGATATTTCAGTACCTTCTTACGAAGTGGCTCTTGTGCTTTGTCGTTGGCATGATCGTTAGCATTATTGGCTTCTGCAACAATCTCGCTGTTGAGAATCTCGCTGGCATCAAGTTTGTGATTACCTCCAATATGATGTTGGAGAAGAGGTTTCAGTTGGCCTTCTTTATATTTTTTGTTTTTAATTTAGGTCTCACGCTTTTTGCCTCCTTAATCACGGCTTTGATAGCACCTACAGCCACCGGTTCAGGTATACCTGAGGTGAAGGCCTATCTAAATGGTGTAGACGCACCTGGAATATTTACTGTGCCAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCGCTTCTTATTGGGAAGGCGGGGCCTATGGTGCATACAGGTGCATGTGTCGCAGCATTGGTAGGTCAGGGTGGGTCGAAGAGATATGGATTAACGTGGAAATGGTTACAATTTTTTAAGAATGATCGAGATCGGAGAGATCTAATAACCTGTGGATCAGCAGCTGGAATGGCTGCTGCCTTCCGTGCCCCTGTTGGTGGTGTGTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTTTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCTTCATTGATCTATGTTTAAGTGGTAAATGTGGGCTATTTGGCAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCAAGTATTCCATATCATTTCGTGGATCTTCCTCCGGTGTTTATTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTATTTAATTTGCTGTTAACAAAAGTTCTTCGGATATACAGTTTTATCAATGAGAAAGGAACTGTTTTCAAAGTTTTGCTTGCTTGTGTAATCTCCATTTTTACATCTTGCCTTCTTTTTGGTTTGCCATGGTTAACTTCTTGCCGCCCTTGTCCACCTAATCCAACTGAACCTTGTCCTACAATAGGCCGGTCTGGGATCTACAAGAAGTTTCAGTGTGCACCTAATCAATACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGATGCTATTAGAAATCTATTTAGCAAGAATACAGATGACGAGTTTGAGTTTACATCAATGTTGATCTTTTTCCTCTCATGCTTTTTTTTAAGTATCTTTAGCTATGGGGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCGTATGGACGCGTTGTTGGAATGTTGCTTGGCAAAAACTCCAGTCTTAACCATGGTCTTTTTGCTGTACTTGGTGCTGCTTCCTTTCTCGGTGGGTCCATGAGGACAACAGTTTCTCTGTGCGTAATTATTCTAGAACTAACCAACAACCTGTTATTGCTACCTGTAATCATGATGGTGCTATTCATATCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCGGAACCATATATGAGGCAGCTAACAGTAGGTGATGTAGTAACAGGCCCACTGCTGACGTTCAATGGCATCGAAAAGGTTCGTAACATAGTGTTTATTCTCAAAACTACAGGACATAACGGGTTTCCTGTTATTGATGAGCCTCCTATTTCGGAAGCTCCAGTGTTATTTGGCATAATCCTTCGTGACCATCTTCTCACGTTGTTGAAGAAGAAAGCTTTTATGTCCTCACCTTTGGCTGCAAGTTTTGATGTCTTCAATAAGTTTTCATCTGATGATTTTGCAAAGAAGGGGGGTTCAAGCAAAGTTCGTCTAAAGATAGAAGATATACAGTTATCAGAGGAAGAGATGAACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAGCTTGGTTTAAGACATCTTCTTGTGATACCCAAGATCTCTAGTAGGTCACCTGTGGTTGGTATACTTACACGACACGATTTCATGCCAGAACATATTTTGGGTTTGCATCCCTTTCTGGTAAGAAACACAGGGAAAAGATCAAGATTTATGGGTGGTTGTCCTAAGAACCTGAAGTTGATGGAATTTGACCATTCGATTATGCTTGAAAAGAAGAAAGATGACGATGTTGCAGTCGAGCCAACTTACCCATATTTGTAA 2523 0.4189 MPLGCYLPYTRTLVGVKLSSFTLHSLPFNTFTSHLVPAMSTNQPGNGDSETPLRQPLLSSQRSIVNSTSQVAIVGVNVCPIESLDYEIFENEFFKQDWRSRGTAQIFQYLLTKWLLCFVVGMIVSIIGFCNNLAVENLAGIKFVITSNMMLEKRFQLAFFIFFVFNLGLTLFASLITALIAPTATGSGIPEVKAYLNGVDAPGIFTVPTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALVGQGGSKRYGLTWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAFIDLCLSGKCGLFGKGGLIMFDAYSASIPYHFVDLPPVFILGVIGGILGSLFNLLLTKVLRIYSFINEKGTVFKVLLACVISIFTSCLLFGLPWLTSCRPCPPNPTEPCPTIGRSGIYKKFQCAPNQYNDLASLIFNTNDDAIRNLFSKNTDDEFEFTSMLIFFLSCFFLSIFSYGVVAPAGLFVPVIVTGASYGRVVGMLLGKNSSLNHGLFAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPVIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLLTFNGIEKVRNIVFILKTTGHNGFPVIDEPPISEAPVLFGIILRDHLLTLLKKKAFMSSPLAASFDVFNKFSSDDFAKKGGSSKVRLKIEDIQLSEEEMNMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVIPKISSRSPVVGILTRHDFMPEHILGLHPFLVRNTGKRSRFMGGCPKNLKLMEFDHSIMLEKKKDDDVAVEPTYPYL 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04999 840 PRINTS Chloride channel signature 552 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 PRINTS Chloride channel signature 277 296 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 PRINTS Chloride channel signature 182 199 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 PRINTS Chloride channel signature 534 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 PRINTS Chloride channel signature 590 604 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 PRINTS Chloride channel signature 213 232 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 PRINTS Chloride channel signature 502 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 PRINTS Plant CLC chloride channel signature 87 95 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst3g04999 840 PRINTS Plant CLC chloride channel signature 330 337 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst3g04999 840 PRINTS Plant CLC chloride channel signature 298 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst3g04999 840 PRINTS Plant CLC chloride channel signature 454 470 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst3g04999 840 PRINTS Plant CLC chloride channel signature 312 322 IPR002251 GO:0005247|GO:0006821|GO:0016020
Spst3g04999 840 Gene3D - 604 786 IPR046342 -
Spst3g04999 840 Pfam Voltage gated chloride channel 170 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst3g04999 840 SUPERFAMILY Clc chloride channel 91 605 IPR014743 -
Spst3g04999 840 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 60 789 - -
Spst3g04999 840 ProSiteProfiles CBS domain profile. 732 793 IPR000644 -
Spst3g04999 840 Gene3D Clc chloride channel 105 603 - -
Spst3g04999 840 Pfam CBS domain 736 782 IPR000644 -
Spst3g04999 840 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 785 - -
Spst3g04999 840 SMART cbs_1 736 787 IPR000644 -
Spst3g04999 840 SMART cbs_1 623 676 IPR000644 -
Spst3g04999 840 FunFam Chloride channel ClC3 105 421 - -
Spst3g04999 840 SUPERFAMILY CBS-domain pair 606 783 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04999 Spst-Chr3 101747412 101753819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04999 46 803 Ion Channels AT5G33280 73.781 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04999 K05016 - gmx:100817901 1312.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04999 3 101747412 101753819 Spst3g04999 3 101747412 101753819 ECH